Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1170 a.a., DNA polymerase III, alpha subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  783 bits (2023), Expect = 0.0
 Identities = 456/1123 (40%), Positives = 651/1123 (57%), Gaps = 65/1123 (5%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+HT  S+ +G +++K LVK    M MPAVA+TD  N+   ++    A   G++PI
Sbjct: 20   FVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDMGVQPI 79

Query: 65   CGADLWLSNK----------------DPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQ 108
             G  + + N+                DPD     + LLA N  GY NL +++SR FI+G 
Sbjct: 80   IGCQIAVRNEEVRERGFGAGRDLRAPDPD----AVVLLAKNASGYANLMKIVSRSFIEGD 135

Query: 109  RNGSIIIEREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLE 168
             + +  +    +   ++GLI+L+    G +G  L  G   EA  +     + F DR Y+E
Sbjct: 136  GSEAPQVRLADIEALNDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRVYVE 195

Query: 169  VQRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPR 228
            +QR    +++      + LA      LVATN+  +  +  FEAH+  +C+ +   + D  
Sbjct: 196  IQRHGMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIGDET 255

Query: 229  RSKNYSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTI 288
            R +  + E Y K A EM  LF+DLPEA++N++ IAKRC +  +  K  LP+ P   G T 
Sbjct: 256  R-RRLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVKGRTE 314

Query: 289  DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKR--QVYVDRLNFELDIIIQMGFPGYFLIV 346
             E    ++ +GL++RL   + ++   + E     + Y +RL +ELD+II+MGFPGYFLIV
Sbjct: 315  AEALCAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFPGYFLIV 374

Query: 347  MDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDV 406
             DFIQWAK+  +PVGPGRGSGAGS VA+   ITDLDPL + LLFERFLNPERVSMPDFD+
Sbjct: 375  ADFIQWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVSMPDFDI 434

Query: 407  DFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIP 466
            DFC D R+ VI YV  +YG   V+QIITFG + A+AV+R V RV     G  D++ KM+P
Sbjct: 435  DFCQDRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDKICKMVP 494

Query: 467  FE--VGMTLEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKL 524
                  +TL++A E E  LRD  K DE  A + D+  KLEG+  +   HA GVVI    L
Sbjct: 495  NNPAAPVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVVIGDRPL 554

Query: 525  TDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEE 584
             +   +Y D      VTQF+   VE AGLVKFDFLGL+TLT++  A++ I +    V   
Sbjct: 555  DNLVALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAKRGITV--- 611

Query: 585  PLDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGP 644
              D+  +PLDD+ +Y +L + ET+ VFQLES GM+++++ +KPD LED++A+VAL+RPGP
Sbjct: 612  --DLLDLPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPGP 669

Query: 645  LQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTL 704
            + +  +  +I RK G  E+ Y H     + L+P+L  TYGI++YQEQVMQ AQ+MAGY+L
Sbjct: 670  MDN--IPSYIKRKKGEEEVVYLH-----DSLEPILKETYGILIYQEQVMQAAQIMAGYSL 722

Query: 705  GGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSA 764
            GGAD+LRRAMGKK   EM  QR  F+EG          A  +FD + KFAGYGFNKSH+A
Sbjct: 723  GGADLLRRAMGKKIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAA 782

Query: 765  AYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFK 824
            AYGLV+YQTA+LKA+YP  FMAA ++ DMHNTDK+     E+R + + L  PDVN S   
Sbjct: 783  AYGLVAYQTAYLKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAV 842

Query: 825  FTVNDEGRIIYGLGAIKGVGEGPVEAITEARQ-DGPFKDLFDFCARVDLKRINKRTLDGL 883
            F V D G + Y LGA+K VG   ++A+   R+  GPFKDL DF  R+D K INKR L+ L
Sbjct: 843  FGVED-GAVRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENL 901

Query: 884  IRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGL 943
            I++GALD               ++D +RA LL   +  ++ A+  A    S  + LFGG 
Sbjct: 902  IKAGALD---------------SLDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGGA 946

Query: 944  FVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKP 1003
                +  +    R     T+ E L  E+D +G YL+ HP+D Y   + R      I++ P
Sbjct: 947  GATSEPPM--KFRACAAWTITETLAHERDAMGFYLSAHPLDIYGDSLERLDVVP-IEMLP 1003

Query: 1004 ARDTQTVAGMII------ALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQ 1057
                   +G +       A +    K G +  F+ L D +G  E  +F++   +++ LL 
Sbjct: 1004 GHLRGGGSGAVKLAVTPGARKERIGKSGSRYAFVELSDATGSCETMVFSEVLGASRELLD 1063

Query: 1058 TDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAESLRL 1100
            +   ++V  +   +     +RL  + +  ++DA    A  +++
Sbjct: 1064 SGRPLLVRADARLE--GEEVRLLAQAIELLDDAVARAARRIKV 1104