Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1076 a.a., error-prone DNA polymerase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  348 bits (892), Expect = 2e-99
 Identities = 250/866 (28%), Positives = 411/866 (47%), Gaps = 51/866 (5%)

Query: 4   SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIK- 62
           ++  L++ + +S + G      LV+     +   +A+TD+N +  +V+ +       +K 
Sbjct: 2   AYSELQVTSNFSFLRGASHAHELVEQAEAFDYQKIAITDRNTLAGIVRAHAACREKNVKL 61

Query: 63  -PICGADLWLSNKDPDNPLSRISLLAM--NGVGYRNLTELISRGFIDGQRNGSIIIEREW 119
            P C  D+       D P    SLLA   +   Y  L+ L++ G +  ++ GS  I R  
Sbjct: 62  IPACRLDML------DGP----SLLAYPTDKDAYGRLSALLTLGNMRAEK-GSCHISRAD 110

Query: 120 VAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAK--EWMQVFPDRFYLEVQRTNRPND 177
           V   S+G+I       GE+          EA  ++   E+ Q    + YL   R+   ND
Sbjct: 111 VYAHSKGIIFC-LVMPGELNRRF----EYEASFISAVAEYKQALNGQLYLAATRSYMGND 165

Query: 178 EEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQ 237
           ++ +     L+D  G P+VAT D+ +      E  +   C+ E   + +     + + E+
Sbjct: 166 DKLIFRTSQLSDFYGIPVVATGDIHYHNPSRRELQDVLTCVREKCTIQEAGFRLHQNAER 225

Query: 238 YLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSF 297
           Y+K   EM  LF   P A++N++ IA+ CN  +   K+  P      G +  E    +++
Sbjct: 226 YMKEVAEMERLFRKYPSAIKNTMVIAEACNFSLDELKYVYPEEINQSGKSPMEELEFLTW 285

Query: 298 DGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNG 357
            G  E     +P+             V  ++ E++ +  M +  YFL V D ++ A++ G
Sbjct: 286 KGAHEFYGEEIPEKV-----------VKMIHHEMEFVRHMDYANYFLFVEDIVREARSRG 334

Query: 358 VPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 417
           + +  GRGS A S + +V  IT ++P+++DLLFERF++P R   PD DVDF  + R+ +I
Sbjct: 335 I-LCQGRGSAANSAICFVLGITSVNPMKFDLLFERFISPARNEPPDIDVDFEHERREEII 393

Query: 418 EYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAY 477
           +Y+  KYGR+  + + T      K  IRDV +  G S    +RLS  I        E   
Sbjct: 394 QYIYNKYGRDRAAIVATVTQQHQKGAIRDVGKAMGLSVDTINRLSSSIWEFTDEWFEGKR 453

Query: 478 EQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGG 537
             E+ L      D    +  ++  ++ G  R +G+H GG V+   KLTD  PI       
Sbjct: 454 VTEQGLN---PNDPHLKKTLELTSQMMGFPRQLGQHTGGFVVTQGKLTDLCPILNARMED 510

Query: 538 GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKP 597
               +++KDD++A G +K D L L  LT I  A         K       +A IP DD  
Sbjct: 511 RTNIEWNKDDIDALGFLKVDVLALGMLTCIRKAFDLCRDYYGK----HFTLANIPQDDPE 566

Query: 598 TYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 657
            Y ++  A+T  VFQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q  MV  ++ R+
Sbjct: 567 VYDMICLADTLGVFQIESRAQMSMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLRRR 626

Query: 658 HGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 717
           +G   + YP  +     L+ +L  T G+ L+QEQ M+IA V AG+T   AD LRR+M   
Sbjct: 627 NGEEPVVYPSPE-----LEEILGRTLGVPLFQEQAMKIAIVAAGFTPAEADGLRRSMATF 681

Query: 718 KPEEMAKQ-RGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776
           K + +  Q     IEG        + A  IF  +E F  YGF +SH+A++ L+ Y + WL
Sbjct: 682 KFKGLVNQYEQKLIEGMLAKGYTLEFAKRIFKQLEGFGSYGFPESHAASFALLVYVSCWL 741

Query: 777 KAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIY- 835
           K +YP  F AA+L++      +   ++ + +   + +   DVN S +   + ++    + 
Sbjct: 742 KHYYPDVFAAALLNSMPMGFYQPAQIVIDAQKHTVEVREVDVNHSLWDNKLEEKSGKYFA 801

Query: 836 ---GLGAIKGVGEGPVEAITEARQDG 858
              G   I G+    V+ +   R +G
Sbjct: 802 MRLGFRQISGIRADDVDTLVNGRGEG 827