Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1076 a.a., error-prone DNA polymerase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  374 bits (960), Expect = e-107
 Identities = 297/1082 (27%), Positives = 494/1082 (45%), Gaps = 98/1082 (9%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            +  L++ + +S + G    + LVK    M    +A+TD N +  +V+ +  A    I+ I
Sbjct: 3    YTELQVTSNFSFLRGASHPEELVKEAAKMGYKKIAITDHNTLAGIVRAHAQARKHNIEII 62

Query: 65   CGADLWLSNKDPDNPLSRISLLAM--NGVGYRNLTELISRGFIDGQRNGSIIIEREWVAE 122
                L        N +   SLLA   +   Y  L+ L+S G +  ++ GS  + ++ V E
Sbjct: 63   PACRL--------NLVDGASLLAYPTDTESYGRLSALLSLGNLRTEK-GSCQLYKKDVFE 113

Query: 123  ASEGLIMLSAAKEGEIGIALLGGNPQEAEVLA--KEWMQVFPDRFYLEVQRTNRPNDEEH 180
             ++G+I ++   E      L  G   +    A  + +     +  YL + RT +  D++ 
Sbjct: 114  YAQGIIFIAIPPEN-----LSEGFDFQLNFYADLQSYQNALKENLYLAINRTYQGEDQKR 168

Query: 181  LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK 240
            +     L+ K G PL ATNDV +      E  +   C+ E   + +       + E++LK
Sbjct: 169  MFRLAKLSQKTGIPLAATNDVYYHSPNRRELQDVLSCVREKCTIHNAGYLLFQNAERHLK 228

Query: 241  SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL 300
               EM  LF   P+ALEN+V+I+++C   +   K+  P     +G T  +  + ++  G 
Sbjct: 229  PEAEMKRLFRQYPQALENTVKISQKCTFSLDSLKYIYPEEITSEGRTPQQELQYLTMKGA 288

Query: 301  EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV 360
             E     LPK  T           D ++ E+  + +M +  YFL V D +++A++  + +
Sbjct: 289  YELFGDELPKKVT-----------DNISHEMKFVEEMNYASYFLTVYDIVRFARSQHI-L 336

Query: 361  GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV 420
              GRGS A S + Y   IT +DP ++DLLFERF++  R   PD DVDF  + R+ VI+Y+
Sbjct: 337  CQGRGSAANSTICYCLGITSVDPTKFDLLFERFISSARNEPPDIDVDFEHERREEVIQYI 396

Query: 421  AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMI------PFEVGMTLE 474
             +KYGR+  + + T      K  IRDV +V G S    +RLS  I       FE G   E
Sbjct: 397  YQKYGRDRAAIVATVTQQRQKGAIRDVGKVMGLSVDTINRLSSSIWEFTDEWFEGGKLTE 456

Query: 475  KAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDE 534
            +     + L           ++  +  K+ G  R +G+H GG VI   KLTD  PI    
Sbjct: 457  QGLNPNDPL---------LRKVLSLTAKMMGFPRQLGQHTGGFVITRGKLTDLCPILNAR 507

Query: 535  EGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLD 594
                   +++KDD++  G +K D L L  LT I    K  +  +A  N E        ++
Sbjct: 508  MEDRTNIEWNKDDIDTLGFLKIDVLALGMLTCI---RKGFDLAKAHYNLELTMGKINEVE 564

Query: 595  DKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFI 654
            D   Y ++  A+T  VFQ+ESR    ++ +L+P    DL+  VA+ RPGP+Q  MV  ++
Sbjct: 565  DPKVYEMISHADTLGVFQIESRAQMSMLPRLRPKKFYDLVIEVAIVRPGPIQGDMVHPYL 624

Query: 655  NRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAM 714
             R++G  ++ YP      E LK +L  T G+ L+QEQ M+IA V AG+T   AD LRR+M
Sbjct: 625  KRRNGEEKVDYPS-----EELKEILHRTLGVPLFQEQAMKIAIVAAGFTPAEADELRRSM 679

Query: 715  GKKKPEEM-AKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQT 773
               K + M  K     I G  +     D A  +F  +E F  YGF +SH+A++ L+ Y +
Sbjct: 680  ATFKAKGMVTKFEQKLISGMTSKGYSEDFAKRVFKQLEGFGSYGFPESHAASFALLVYVS 739

Query: 774  AWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEG-- 831
             WLK +YP  F  A+L++      +   ++ + +   + +   D+N S +   + ++   
Sbjct: 740  CWLKCYYPDVFATALLNSMPMGFYQPAQIVIDAKKHGVEIRPIDINYSAWDNLLEEKSGK 799

Query: 832  --RIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGAL 889
               I  G   IKG+    +E + + R+ G                I+ + +D  +   AL
Sbjct: 800  YHAIRLGFRQIKGMKAEDIELLDKGRKKG-------------YGHIH-QLMDAGVSLSAL 845

Query: 890  DRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDA 949
            +RL     D        +DR  A+                    S  AD    LF  + +
Sbjct: 846  ERLA----DADAFGSIGLDRRAAL-----------------WEVSAMADRPVALFENQPS 884

Query: 950  DVYGNHRKAKELTLK-ERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ 1008
            +     +    L  K E +  +  +  L L  HP+     ++          L  A+D Q
Sbjct: 885  ESSLETQATLPLMSKGEHVIQDYASTSLSLKAHPVSFVREQLSLLHVLPTKSLASAKDGQ 944

Query: 1009 T--VAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEG 1066
            +  VAG+++  +     KG  + FIT++D +G     +F + F   +  +    +++VEG
Sbjct: 945  SVKVAGLVLVRQRPGTAKG--VCFITIEDETGFTNLVVFENLFEKFRKEIIQSRLLMVEG 1002

Query: 1067 EV 1068
            ++
Sbjct: 1003 KL 1004