Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

 Score = 1303 bits (3372), Expect = 0.0
 Identities = 669/1170 (57%), Positives = 842/1170 (71%), Gaps = 28/1170 (2%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H+++S+ DGL ++KP++       M A+A+TD  N+C LVKFY    GAGIKPI
Sbjct: 6    FVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGAGIKPI 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             G D ++     ++    +++LAMN  GY+NLT LIS  ++ G      +I++ W+   S
Sbjct: 66   VGCDFFMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGHVKDRAVIDQAWLERYS 125

Query: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184
            EGLI+LS AK+G++G ALL GN  + + L   +   FPDR+YLE+ RT RP++E +LH A
Sbjct: 126  EGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRTGRPDEERYLHMA 185

Query: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244
            V LA +   P+VATN V FI+ E FEAHE RV I +G  L DPRR + YSE+QY +  +E
Sbjct: 186  VELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRRYSEQQYFRIQDE 245

Query: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304
            M ELF D+PEAL+NSVEIAKRCN+ V+LG++FLPNFP  D ++I+++  +VS  GLEERL
Sbjct: 246  MCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGD-LSIEDFLVEVSKKGLEERL 304

Query: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364
              L P +       +R  Y +RL+ EL +I  MGFPGYFLIVM+FIQW K+NG+P+GPGR
Sbjct: 305  EFLFPDEAQR--AERRGEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKDNGIPIGPGR 362

Query: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424
            GSGAGSLVAY  KITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD RD VI++VAE Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELY 422

Query: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
            GR+AVSQIITFG+MAAKAV+RDV RV G  YG  DR+SKMIP E GMTL KA+E E  L 
Sbjct: 423  GRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPGMTLAKAFEAEPALP 482

Query: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544
            +    DEE  ++ DM R LEGV RN GKHAGGVVIAPT +TDF+P+YCD EG   VTQFD
Sbjct: 483  EAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITDFAPLYCDAEGHNPVTQFD 542

Query: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604
            K+DVE AGLVKFDFLGLRTLTIIDWAL+ IN   AK  +EP+ I  I LDD  ++ LLQ+
Sbjct: 543  KNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKEPVRIEAIVLDDPASFRLLQR 602

Query: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664
             ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI RKHGR E++
Sbjct: 603  YETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREEVS 662

Query: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724
            YP   +Q+E LKP+L PTYGIILYQEQVMQIAQV+AGYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 663  YPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAK 722

Query: 725  QRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPF 784
            QR  F EG   N +D +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK H+PA F
Sbjct: 723  QRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPAQF 782

Query: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVG 844
            MAAV+SADM NTDK+VTL++E   M L L  PDVN   F+FTV+D+  I+YG+GAIKGVG
Sbjct: 783  MAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKGLFRFTVDDDLNIVYGIGAIKGVG 842

Query: 845  EGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQ 904
            EGPVE+I +AR+DGPF DLFDFCARVDLK++N+R ++ LI +GALD LGP+         
Sbjct: 843  EGPVESILKAREDGPFIDLFDFCARVDLKKLNRRVIEKLICAGALDNLGPH--------- 893

Query: 905  ANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTLK 964
                  RA ++  + EAI+AA+Q A+    G  D+F GL   E  D             K
Sbjct: 894  ------RAAMMATLPEAIRAADQHAKAEAIGQHDMF-GLLNSEPEDNKQQFVHCTPWPDK 946

Query: 965  ERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPAR--DTQTVAGMIIALRVMKN 1022
              L+GE+DTLGLYLTGHPI++Y  E++ +   R+ D+ P     T   AG+++A RVM  
Sbjct: 947  VWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAAGLVVATRVMMT 1006

Query: 1023 KKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIK 1082
            K+G KMG +TLDD+S R+E  LF +AF     LL+ D +++VEGEVS DDFSGG R+  +
Sbjct: 1007 KRGSKMGLVTLDDKSARLEVMLFTEAFEKFGELLEKDRILIVEGEVSFDDFSGGNRMTAR 1066

Query: 1083 RVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKR----HRGACPVTMEYTGSDAK 1138
             ++ M +AR++ A ++ + +   ++  +   WLG+  +       G+ P+ + Y    AK
Sbjct: 1067 SIIDMGEARSHFAHAVEVDLDGASITPE---WLGQFQQAVEPWKAGSVPLVINYAQPTAK 1123

Query: 1139 AMLQFGETWRIDPADGLIQALRDQFGRDNV 1168
            A  + G+ WR++P D L+ AL    G D V
Sbjct: 1124 AQFRLGDEWRVNPTDELMLALETLTGSDKV 1153