Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1078 a.a., DNA polymerase III, alpha subunit (RefSeq) from Shewanella loihica PV-4

 Score =  312 bits (800), Expect = 8e-89
 Identities = 245/910 (26%), Positives = 418/910 (45%), Gaps = 95/910 (10%)

Query: 5   FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
           +  L + + YS + G      LV+    +   A+A+TD+ +   +VK ++ A    +K I
Sbjct: 7   YAELHVLSNYSFLRGASHPHELVEQAKRLGYQALALTDECSFAGVVKAHEAAKRCDLKLI 66

Query: 65  CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
            GA+  L             LLA     Y  ++ LI+      Q  G   +  E +    
Sbjct: 67  LGAEFHLDE-------GLFVLLAPCRFAYGEISALITNAR-RSQGKGEYRVSLEAILAQQ 118

Query: 125 EGLIML---SAAKEGEIGIA-----------------------LLGGNPQEAEV------ 152
           + L++    S A+  + G A                       + GG+  +         
Sbjct: 119 QSLLLWRPPSLAQFRQAGEARRDEARSDDARSDLAVNDTAESEMAGGDTAKGSAAQSDEP 178

Query: 153 ------------LAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAAVALADKLGAPLVATND 200
                       +A   +  FPDR +L ++R   P +  +L     L+     P VA   
Sbjct: 179 NLLSRYRDHIASIASRLVVAFPDRLHLLMERLLLPGEALNLQQWQWLSQTQKVPCVAAGG 238

Query: 201 VRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEEMAELFSDLPEALENSV 260
           VR  + E     +   CI  GR LD      + + E  LK      + +    E ++N +
Sbjct: 239 VRMHEAERQPLLDILTCIAHGRDLDSGVALCSINAEASLKPIAAQRKRYPQ--EWIDNGL 296

Query: 261 EIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERLSVLLPKDTTEDYEAKR 320
            +A+RC+  +   K+  P   +P GM   +Y  +   +G   R    +P      YE   
Sbjct: 297 ALARRCHFSLDELKYEYPAEVVPAGMQASDYLAQAVREGARRRFPDGVPDRVKAQYEK-- 354

Query: 321 QVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITD 380
                    EL++I  M +  +FL + D + +AK+  + +  GRGS A S+V Y   IT+
Sbjct: 355 ---------ELELIAAMAYEYFFLTIYDIVCFAKSQQI-LYQGRGSAANSVVCYCLGITE 404

Query: 381 LDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAA 440
           +DP + ++LFERF++ ER   PD DVDF  + R+ VI+Y+  KYGR+  +          
Sbjct: 405 VDPTKINMLFERFISKERNEPPDIDVDFEHERREEVIQYIYRKYGRDRTALAAAVICYRF 464

Query: 441 KAVIRDVARVQGKSYGL-ADRLSKMIPFEVGMTLEKAYEQEEILRDFIKIDEEAAE---I 496
           K+ + DV    GK+ G+ A++++ MI       +++   +         +  EA     +
Sbjct: 465 KSAMGDV----GKALGIDAEQVALMI-----KNIDRRDPKHHWTTQLAAMLPEAGRGRML 515

Query: 497 WDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKF 556
             + + L G  R++ +H GG +I+   L++  PI         V Q+DKDD+E+ GL+K 
Sbjct: 516 LPLVQTLIGFPRHLSQHVGGFIISAGPLSELVPIENAAMADRTVIQWDKDDLESLGLLKV 575

Query: 557 DFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQKAETTAVFQLESR 616
           D L L  LT I      ++     + E+   +A +  ++   Y +LQ  ++  VFQ+ESR
Sbjct: 576 DILALGMLTAIRKTFTLLS-----LPEKAFSMADVAWEEAEVYRMLQAGDSIGVFQVESR 630

Query: 617 GMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLK 676
               ++ +LKP C  DL+  +A+ RPGP+Q  MV  ++ R+ G   + YP        ++
Sbjct: 631 AQSAMLPRLKPACYYDLVVQIAIVRPGPIQGDMVHPYLRRRDGLEAVEYPS-----PAVE 685

Query: 677 PVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEMAKQRGGFIEGCAT 735
            VL+ T G+ ++QEQV+Q+A V AG++ G AD LRRAM   K+  E+ K     ++G A 
Sbjct: 686 SVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWKRTGELEKFEAKLLQGMAA 745

Query: 736 NNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHN 795
                  A  I+  ++ F  YGF +SHSA++ L++Y +A+LK HYPA F  A+L++    
Sbjct: 746 RGYSQTFAEQIYRQIKGFGEYGFPESHSASFALLAYVSAYLKHHYPAAFCCALLNSQPMG 805

Query: 796 TDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV-----NDEGRIIYGLGAIKGVGEGPVEA 850
                 LI++V+   + +    VN S++  ++      ++  I  G   +KG+    ++ 
Sbjct: 806 FYSPSQLIQDVQRHDVMVLPVCVNHSDWDNSLVPLLEAEQPAIRLGFRQVKGLRLEEIKT 865

Query: 851 ITEARQDGPF 860
           +  AR +G F
Sbjct: 866 LIAARPEGGF 875