Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1110 a.a., DNA-directed DNA polymerase III PolC from Dechlorosoma suillum PS

 Score =  340 bits (873), Expect = 3e-97
 Identities = 264/905 (29%), Positives = 430/905 (47%), Gaps = 63/905 (6%)

Query: 5   FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
           +  L   + +S + G    + LV+  V +   A+AVTD+ +    V+ +  A  AG+K I
Sbjct: 15  YAELHCLSNFSFLRGASHPEELVQRAVELGYGALAVTDECSFAGSVRAHVAAKAAGLKLI 74

Query: 65  CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
            G ++ L++        ++ LLA N  GY NL+ LI+      ++    +   +      
Sbjct: 75  HGTEIVLADG------LKLVLLAQNREGYGNLSALITLARRRAEKGAYRLTRGDLEGFGP 128

Query: 125 EGLIMLSAAKEGEIGIALLGGNPQ---EAEVLAKEWM-QVFPDRFYLEVQRTNRPNDEEH 180
            G +           +AL    PQ     +     W+ Q FP R +L V+    P+D   
Sbjct: 129 SGALPDC--------LALWVPGPQFDSPPDPADGRWLAQRFPGRSWLAVELHAGPDDRGR 180

Query: 181 LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK 240
           L     LA   G PL+A  DV    +      +    +     +     + + + E++L+
Sbjct: 181 LEQLQQLAADCGLPLLAAGDVHMHSRARRPLQDVLTALRLNTTVFAAGHALHPNGERHLR 240

Query: 241 SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL 300
               +A L+   PE L  ++ +A RC   +   ++  P   +P G+T   Y R+     +
Sbjct: 241 PRLRLARLYP--PELLAETLAVAARCTFSLDELRYEYPEEVVPHGLTPAAYLRQE----V 294

Query: 301 EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV 360
           E  L+V  P    E  +A+ QV      +EL +I ++ +  YFL V D +++A++  + +
Sbjct: 295 EAGLAVRYPDGVPE--KARAQV-----EYELGLIARLQYEAYFLTVYDIVRFARSREI-L 346

Query: 361 GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV 420
             GRGS A S V Y   IT++DP + +LLFERF++ ER   PD DVDF    R+ VI+Y+
Sbjct: 347 CQGRGSAANSAVCYALGITEVDPAKSELLFERFISAERGEPPDIDVDFEHQRREEVIQYL 406

Query: 421 AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE 480
             KYGR   +      +   +  +RD  R  G      D L+  + +      ++  E  
Sbjct: 407 YAKYGRERAALTGALITYRTRGALRDAGRALGFGREQIDALAGTLAW-----WDRQDELP 461

Query: 481 EILRDFIKIDEEAAEI--W-DMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGG 537
           E LR  + +D E+  +  W  ++R L G  R++ +H GG VI+   L+   PI       
Sbjct: 462 ERLR-AVGLDPESPRVAKWLAVSRALRGFPRHLSQHVGGFVISRGPLSRLVPIENAAMAE 520

Query: 538 GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKP 597
             V Q+DKDD++A GL+K D L L  L+ I  AL  +     K    P+ +  IP + K 
Sbjct: 521 RSVIQWDKDDIDALGLMKVDVLALGMLSAIRRALDMLGARDGK----PVRLQDIPRESKA 576

Query: 598 TYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 657
            Y +L + ++  +FQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q  MV  ++ R+
Sbjct: 577 VYDMLCRGDSLGIFQVESRAQMAMLPRLKPRQFYDLVVQVAIVRPGPIQGDMVHPYLKRR 636

Query: 658 HGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK- 716
           HG  ++     +     +  VL  TYG+ ++QEQVMQ+A V AG+T G AD LRRAM   
Sbjct: 637 HGEEKI-----EKISPAVDKVLQRTYGVPIFQEQVMQLAVVAAGFTPGEADQLRRAMAAW 691

Query: 717 KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776
           K+   +       I G     +    A  IF+ ++ F  YGF +SH+A++ ++ Y +AWL
Sbjct: 692 KRKGGLEPFEQKLIRGMQERGLPESFARRIFEQIKGFGDYGFPESHAASFAILVYFSAWL 751

Query: 777 KAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVND------- 829
           K   PA F+  +L+A          L+++ +   + +  PDV  S ++  + +       
Sbjct: 752 KRFEPAAFLCGLLNAHPMGFYAPAQLVQDAQRHGVTVLPPDVTHSAWESLLVELLPGHPP 811

Query: 830 --EGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSG 887
                +  GL  I G  +   E I  ARQ+GPF+ + D  AR  L+R     L+ L  + 
Sbjct: 812 ARPRTVRLGLREIAGFNQAAAERIVAARQEGPFQSVADLAARAGLQR---PELERLAAAN 868

Query: 888 ALDRL 892
           AL  L
Sbjct: 869 ALQAL 873