Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1151 a.a., DNA-directed DNA polymerase III PolC from Dechlorosoma suillum PS

 Score = 1083 bits (2800), Expect = 0.0
 Identities = 589/1177 (50%), Positives = 773/1177 (65%), Gaps = 41/1177 (3%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLRLH+EYS+ DG+VR+   V   +    PA+A+TD  N   LVKFY    G G+KP+
Sbjct: 6    FVHLRLHSEYSITDGIVRLDDAVARAIADGQPAMALTDLANAFGLVKFYNACRGKGVKPV 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             GAD+W++N+   +   R+ LL  +  GY  L EL+SR ++   R     I+R W  E  
Sbjct: 66   AGADVWIANETETDRPFRLLLLVRSHRGYLQLCELLSRAYLAEGRRDRAEIKRAWFDEVG 125

Query: 125  -EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHA 183
             +GLI LS AK+G++G ALL GN   A   AK W   FP  FYLEVQR   P  E+ + A
Sbjct: 126  CDGLIALSGAKDGDVGDALLAGNRDLAAARAKAWSAQFPQAFYLEVQRAGHPQQEQLVSA 185

Query: 184  AVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAE 243
               L   L  PLVAT+ ++F+  +DF+AHE RVCI EG  L D RR K ++E+QY K+  
Sbjct: 186  TADLGADLELPLVATHPIQFLDADDFKAHEARVCIAEGYVLGDRRRPKTFTEQQYFKTQA 245

Query: 244  EMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEER 303
            EMAELF+DLPEALEN++EIAKRCN+ + LGK+FLP FP PDG+++D++    +  GLE+R
Sbjct: 246  EMAELFADLPEALENTLEIAKRCNLTLTLGKNFLPQFPTPDGISLDQHLINEAKAGLEKR 305

Query: 304  LSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPG 363
            L +L P    E+ + +R  Y +RL  E   I+QMGFPGYFLIV DFI W K+NGVPVGPG
Sbjct: 306  LELLFPDP--EERQRRRPEYDERLEIETKTIVQMGFPGYFLIVADFINWGKHNGVPVGPG 363

Query: 364  RGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEK 423
            RGSGAGSLVAY   ITDLDPL+Y LLFERFLNPERVSMPDFD+DFC D R RVIEYV  K
Sbjct: 364  RGSGAGSLVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQDNRWRVIEYVRHK 423

Query: 424  YGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQEE 481
            YG +AVSQI TFG+M++KAVIRDV RV    Y   D LSK+IP E    ++L +A E E 
Sbjct: 424  YGVDAVSQIATFGTMSSKAVIRDVGRVLDLPYNFCDSLSKLIPVEANKPVSLAQALEMEP 483

Query: 482  ILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVT 541
             L++ ++ +EE AE++++A KLE + RNVG HAGGV+IAP KLTDF P+Y       +V+
Sbjct: 484  QLKEKMEEEEEVAELFELAMKLEDLTRNVGMHAGGVLIAPGKLTDFCPLYAQPGSDSVVS 543

Query: 542  QFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTL 601
            Q+DKDDVE  GLVKFDFLGLR LTII+ A++ + R    +  E LD+  +P  D   Y +
Sbjct: 544  QYDKDDVEKVGLVKFDFLGLRNLTIIELAVEYVER----LTGEKLDLLSLPFTDPAAYQI 599

Query: 602  LQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRA 661
            L+ A TTA+FQ+ES GMK+L+KKL PD  ED+IA++AL+RPGPL SGMVDDFI RK G+ 
Sbjct: 600  LKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKKGQQ 659

Query: 662  ELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEE 721
            ++ Y H D     LK  L PTYG+I+YQEQVMQI+Q++ GYTLGGADMLRRAMGKKK EE
Sbjct: 660  KIDYFHPD-----LKGCLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKAEE 714

Query: 722  MAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYP 781
            MAK R    EG      D  LA  +FDL+ KFA YGFNKSH+AAY +V+Y TAWLKAH+ 
Sbjct: 715  MAKHRETIAEGAKKKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAMVTYHTAWLKAHHC 774

Query: 782  APFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIK 841
            + FMAA +S+DM NTD V    E+     +++  PDVN S+++F   D   I YGLGA+K
Sbjct: 775  SAFMAATMSSDMDNTDTVKIFYEDTVKNGIKVLPPDVNHSDYRFVPVDGKTIRYGLGAVK 834

Query: 842  GVGEGPVEAITEAR-QDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP 900
            G G+  VE I  AR + GPFKDLFDFC RVD + +N+RT++ LIR+GA D L P      
Sbjct: 835  GTGQQAVECILAARAEGGPFKDLFDFCLRVDKRLVNRRTIEALIRAGAFDTLDP------ 888

Query: 901  KAYQANIDRNRAVLLTAMEEAIKAAEQTAR-THDSGHADLFG-GLFVEEDADVYGNHRKA 958
                    R+RA L+ ++  A++AA+Q  R  H  G  ++FG G     +A  Y + R  
Sbjct: 889  -------SRDRAQLIASVSIAMEAADQAERNAHQGGLFEMFGSGDDAVAEAPQYVSVRPW 941

Query: 959  KELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALR 1018
             +   K+RL  EK  LG + +GHP D    E +RFA + +  L PAR+ QT+AG+++ LR
Sbjct: 942  SD---KQRLLEEKTALGFFYSGHPFDSIRSEAKRFAGRPLSALAPAREPQTLAGVVMDLR 998

Query: 1019 VMKNKKGDKMGFITLDDRS-GRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGL 1077
            V    +G +MG I LDD S   +E +++++ F + ++ L+ D  +++EG+VS DDF  GL
Sbjct: 999  VKMTSRG-RMGIIILDDGSCPSLEVTVYSEVFDAHRNKLKVDEPLIIEGKVSKDDFRDGL 1057

Query: 1078 RLRIKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLK--RHRGACPVTMEYTGS 1135
            R+  + + ++ +ART  A  LRL +  +A      R L ELL   R  G CPV + Y   
Sbjct: 1058 RIVAENLYTLPEARTRFARQLRLSMNGQA----DARKLQELLTPFRMEGGCPVRIAYRNG 1113

Query: 1136 DAKAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172
            +A+  L  GE  R+ P D L+Q L+D      V LQY
Sbjct: 1114 EAQCELILGEGTRVRPDDDLLQTLQDWLSPAGVELQY 1150