Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1184 a.a., Probable DNA polymerase III (alpha chain) DnaE1 (DNA nucleotidyltransferase) from Mycobacterium tuberculosis H37Rv

 Score =  662 bits (1707), Expect = 0.0
 Identities = 415/1208 (34%), Positives = 649/1208 (53%), Gaps = 83/1208 (6%)

Query: 3    ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIK 62
            +SFVHL  HTEYS++DG  +I P++  +  + MPAV +TD  NM    +FY +A  AGIK
Sbjct: 8    SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67

Query: 63   PICGADLWL----------------SNKDPD----NPLSRISLLAMNGVGYRNLTELISR 102
            PI G + ++                S K  D       + ++++A N  G RNL +L S 
Sbjct: 68   PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127

Query: 103  GFIDGQRNGSIIIEREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVF- 161
               +GQ +    ++ E +AE +EG+I+ +    GE+   L  G  +EA   A +W ++  
Sbjct: 128  ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187

Query: 162  PDRFYLEVQRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEG 221
            PD ++LE+       +       + +   L  P +ATND  ++ ++    HE  +C+  G
Sbjct: 188  PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247

Query: 222  RALDDPRRSKNYSEEQYLKSAEEMAELFSD-LPEALENSVEIAKRCN--IEVKLGKHFLP 278
            + L DP R K   +  YLKSA EM +++ D +P A ++++ IA+R     +V   +  +P
Sbjct: 248  KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307

Query: 279  NFPIPDGMTIDEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMG 338
             FP+PDG     + R     GL  R     P             Y +R  +E+D+I   G
Sbjct: 308  VFPVPDGHDQASWLRHEVDAGLRRRFPAGPPDG-----------YRERAAYEIDVICSKG 356

Query: 339  FPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPER 398
            FP YFLIV D I +A++ G+ VGPGRGS AGSLVAY   ITD+DP+ + LLFERFLNPER
Sbjct: 357  FPSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPER 416

Query: 399  VSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQ--GKSYG 456
             SMPD D+DF    R  ++ Y A+K+G + V+Q+ITFG++  KA ++D AR+      + 
Sbjct: 417  TSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 476

Query: 457  LADRLSKMIPFEV--------GMT--LEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGV 506
            +ADR++K +P  +        G+T    + Y++   +R  I+ D +   I+  AR LEG+
Sbjct: 477  IADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 536

Query: 507  VRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTI 566
            +RN G HA  V+++   LT+  P++   + G ++T +D    EA GL+K DFLGLR LTI
Sbjct: 537  IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTI 596

Query: 567  IDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLK 626
            I  A+  +  +R       LD+  +PLDDK TY LL + +T  VFQL+   M++L+++++
Sbjct: 597  IGDAIDNVRANRG----IDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQ 652

Query: 627  PDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGII 686
            P   ED++A++AL+RPGP+     +D+ +RK+ R  +   H + + E L+ +LA TYG+I
Sbjct: 653  PTGFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELE-EPLREILAETYGLI 711

Query: 687  LYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNI 746
            +YQEQ+M+IAQ +A Y+L  AD+LR+AMGKKK E + K+  GF +G   N         +
Sbjct: 712  VYQEQIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKAL 771

Query: 747  FDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEV 806
            +D +  FA Y FNKSH+A YG+VSY TA+LKA+YPA +MA +L++   + DK    + + 
Sbjct: 772  WDTILPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADC 831

Query: 807  RTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQD-GPFKDLFD 865
            R + + +  PDVN S   F    +  I YGLGA++ VG   V ++ + R D G F D  D
Sbjct: 832  RKLGITVLPPDVNESGLNFASVGQD-IRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSD 890

Query: 866  FCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAA 925
            +  ++D+   NK+  + LI++GA D LG   H     +  + D   +VL T   EA+   
Sbjct: 891  YLNKIDISACNKKVTESLIKAGAFDSLG---HARKGLFLVHSDAVDSVLGTKKAEALGQF 947

Query: 926  EQTARTHD-SGHADLFGGLFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPID 984
            +      D +G AD    + V +D           E   K +L  E++ LGLY++GHP++
Sbjct: 948  DLFGSNDDGTGTADPVFTIKVPDD-----------EWEDKHKLALEREMLGLYVSGHPLN 996

Query: 985  EYEGEIRRFARQ------RIIDLKPARDTQT-VAGMIIALRVMKNKKGDKMGFITLDDRS 1037
               G     A Q       I+D     D Q  V G++ ++    NK G       L+D +
Sbjct: 997  ---GVAHLLAAQVDTAIPAILDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLT 1053

Query: 1038 GRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMED-ARTNLAE 1096
            G IE   F   + S  + +  DA+V+V  +V+  D    L   I   +++ D +   +  
Sbjct: 1054 GGIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRDDRIAL---IANDLTVPDFSNAEVER 1110

Query: 1097 SLRLKVKTEALKGDQLRWLGELLKRHRGACPVTMEYTGSDAKAMLQFGETWRIDPADGLI 1156
             L + + T     D++  L ++L RH G   V +     D    L   ++ R+ P+  L+
Sbjct: 1111 PLAVSLPTRQCTFDKVSALKQVLARHPGTSQVHLRLISGDRITTLALDQSLRVTPSPALM 1170

Query: 1157 QALRDQFG 1164
              L++  G
Sbjct: 1171 GDLKELLG 1178