Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1173 a.a., DNA polymerase III, alpha subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  868 bits (2243), Expect = 0.0
 Identities = 483/1192 (40%), Positives = 712/1192 (59%), Gaps = 79/1192 (6%)

Query: 3    ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIK 62
            + FVHL  HTEYSL+DG +R+K L    V   MPA A+TD  N+   V FY      GIK
Sbjct: 2    SDFVHLHCHTEYSLLDGAIRLKDLCAKAVDFGMPAAAITDHGNLYGAVYFYNTCKQFGIK 61

Query: 63   PICGADLWLSNKDPD--NPLSRIS----LLAMNGVGYRNLTELISRGFIDGQRNGSIIIE 116
            PI G +++++N   D  + L+R+     LLA +  GY NL +L+S GF+ G      + +
Sbjct: 62   PIIGCEVYVANDHTDKTSELARVRHHLVLLARDNEGYHNLVKLVSHGFLHGFHYKPRV-D 120

Query: 117  REWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPN 176
             + + + S G+  LSA   G++  ALL     +A  +A+E+  ++P  FYLE+Q      
Sbjct: 121  MDLLRQYSGGITALSACLAGQVPRALLRSGMDDAIRIAREYEAIYPGNFYLELQSNGLKE 180

Query: 177  DEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEE 236
             +E     + LAD  G PLVATND  +++  D EAH+  +CI     +DD RR +  ++E
Sbjct: 181  QDELNEKLIELADHTGLPLVATNDCHYLEASDVEAHDVLLCIQTQAKVDDERRMRFETKE 240

Query: 237  QYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVS 296
             Y KS EEMA+ F+ +P+A+ N+  IA++C ++ + GK+  P + +P+GMT+++ FR++S
Sbjct: 241  LYYKSPEEMAKAFAHVPDAVANTGRIAEQCAVKFEFGKYVFPVYALPEGMTLEDEFRRLS 300

Query: 297  FDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNN 356
             +GL+ RL     +DT +       +Y  RL  ELD+I QMGFPGYFLIV DFI WAK+N
Sbjct: 301  REGLKRRLERHPNRDTID-----HDLYWKRLELELDVIGQMGFPGYFLIVQDFINWAKDN 355

Query: 357  GVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRV 416
            G+PVGPGRGS AGSLVA+  +IT+LDP+ Y+LLFERFLN ERVSMPD DVDFC   R  V
Sbjct: 356  GIPVGPGRGSAAGSLVAWSLRITNLDPIPYNLLFERFLNIERVSMPDIDVDFCERRRTEV 415

Query: 417  IEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKA 476
            I YV EKYG + V+QI TFG M AKAV+RDV R  G ++   DR++K++P ++ MT++KA
Sbjct: 416  IRYVGEKYGEDMVAQITTFGKMKAKAVVRDVGRALGMTFAETDRIAKLVPEDLKMTVKKA 475

Query: 477  YEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEG 536
             + E  L    K D +  ++ D++ +LEG+ R+   HA GVV++   + ++ P+Y  ++G
Sbjct: 476  IDAEPDLAALYKTDPQIRKLLDVSMRLEGLSRHASTHAAGVVVSDRPMREYLPLYRGKKG 535

Query: 537  GGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDK 596
              +VTQFD   VE  GLVKFDFLGLRT+T++  +L  I    A+  + P D+  + LDD 
Sbjct: 536  E-IVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDSLDEI----ARQGKTPPDLDTLALDDA 590

Query: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656
             TY L  + +T  +FQ+ES GM++ ++ LKP C +D+IA++AL+RPGPL SGMVD+FI R
Sbjct: 591  ETYELYSRGDTDGIFQVESSGMRQYLRMLKPSCFDDVIAMLALYRPGPLGSGMVDEFIKR 650

Query: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716
            KHG   + YP        L+  L  TYG+I+YQEQVMQIAQ+ AGYTLGGAD+LRRAMGK
Sbjct: 651  KHGEVPVTYP-----LPSLEDCLRDTYGVIVYQEQVMQIAQIAAGYTLGGADLLRRAMGK 705

Query: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776
            K  EEM +QR  F+EG   N +    A  IFDL+EKFA YGFNKSHSAAY L+SY TA+L
Sbjct: 706  KNAEEMGQQRIKFVEGAQKNGVPKATADEIFDLMEKFAEYGFNKSHSAAYALISYYTAYL 765

Query: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYG 836
            K H+P  FMAA+L+++M N DK++  +   + M + +  P+V AS  +FTV+ EG I++G
Sbjct: 766  KVHFPTEFMAALLTSEMGNQDKLLKYVAACKDMGIAVLQPNVQASRREFTVH-EGAIVFG 824

Query: 837  LGAIKGVGEGPVEAITEARQDGP-FKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPY 895
            LG IK VG+  +  I +AR++G  F  L D C RV+L+++ KR L+ LI+ GA D LG  
Sbjct: 825  LGGIKNVGDEAIREIVDAREEGGVFASLLDLCMRVNLRKVTKRVLESLIKGGACDCLGC- 883

Query: 896  FHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYG-- 953
                           RA +L A++  +  A++  +  +S    LF  +  EE A   G  
Sbjct: 884  --------------TRAGMLAALDNVVSKAQKRLKDKESNQVSLFT-MVPEEPAVCPGIG 928

Query: 954  ---NHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARD---- 1006
                 ++A+E    ++L+ EK+ LG +LT HP+  Y  E+ R    R+  L+  RD    
Sbjct: 929  FDCEEQQAQEWDDDQKLRFEKEALGFFLTSHPLQPYRKELFRL---RLTPLEETRDMAPG 985

Query: 1007 -TQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVE 1065
             +   A ++  ++    KKG +M F+ ++D +   E   F + +   + LL++D  +++E
Sbjct: 986  MSLKTAVLVTGIKEHMTKKGARMAFLQVEDLTASGECVFFPEPYAEFRELLKSDQPLLLE 1045

Query: 1066 GEVS--------------------------NDDFSGGLRLRIKRVMSMEDARTNLAESLR 1099
              +S                          +DD    ++L   +V+ +  A     + + 
Sbjct: 1046 ATISKQQNDDGGRNGGGGDGMSGSAGMTEDDDDTPREIKLLGDKVIPLARACGASDQPVT 1105

Query: 1100 LKVKTEALKGDQLRWLGELLKRHRGACPVTMEYTGSDAKAMLQFGETWRIDP 1151
            + +    ++   L  L  +L+RHRG  PV +     +++ +LQFG  W + P
Sbjct: 1106 IDMPLPRVEPASLAALRAILERHRGPVPVNVRLVVDESECLLQFGPQWMVQP 1157