Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1158 a.a., DNA polymerase III, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1321 bits (3420), Expect = 0.0
 Identities = 670/1170 (57%), Positives = 858/1170 (73%), Gaps = 28/1170 (2%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H+++S+ DG+ ++KP++  +    M AVA+TDQNN+C LVKFY    GAGIKPI
Sbjct: 6    FVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGAGIKPI 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEAS 124
             GAD W+     ++    ++++AM+  GY+NLT++IS+ ++ GQ  G ++I++EW+   +
Sbjct: 66   IGADFWMQVPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYLRGQVQGRVVIDQEWLITYN 125

Query: 125  EGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHAA 184
             G+++LS  KEG+IG ALL GN  + E L + + Q F  R++LE+ RT RP++E +LH A
Sbjct: 126  PGILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGRYFLELLRTGRPDEERYLHMA 185

Query: 185  VALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAEE 244
            V +A + G P+VATN V F+K EDFEAHE RV I +G  L DPRR K YSE+QYL+S +E
Sbjct: 186  VGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYLRSEDE 245

Query: 245  MAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304
            M ELF+D+P AL N+VEIAKRCN+ ++L ++FLPNFP  D M+I+++    S  GLEERL
Sbjct: 246  MCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPTGD-MSIEDFLVDCSKKGLEERL 304

Query: 305  SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPGR 364
            + L P         +R  Y +RL+ EL +I QMGFPGYFLIVM+FIQW K+NG+PVGPGR
Sbjct: 305  AFLFPDPQVR--AERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGPGR 362

Query: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424
            GSGAGSLVAY  KITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD RD VI++VAE Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELY 422

Query: 425  GRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
            GR AVSQIITFG+MAAKAVIRDV RV G  YG  DR+SK+IP E GMTL KA+E E  L+
Sbjct: 423  GREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPALQ 482

Query: 485  DFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFD 544
            +    DE+  ++ DM RKLEGV RN GKHAGGVVIAPTK+TDFSP+YCD EG   VTQFD
Sbjct: 483  ESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQFD 542

Query: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQK 604
            K+DVE AGLVKFDFLGLRTLTI+DWAL+ IN+   K    P+ I  IPLDD  ++ LLQ+
Sbjct: 543  KNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRSPIRIEAIPLDDPASFRLLQR 602

Query: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELA 664
             ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI RKHGR E++
Sbjct: 603  YETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREEVS 662

Query: 665  YPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724
            YP S YQ+E LK +L+PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 663  YPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722

Query: 725  QRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPF 784
            QR  F EG   N +D +L+  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK H+P  F
Sbjct: 723  QRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPPQF 782

Query: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVG 844
            MAAV+SADM NTDK+VTL++E   M L +  PDVN   FKFTV+D+ RI+YG+GAIKGVG
Sbjct: 783  MAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKGVG 842

Query: 845  EGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQ 904
            EGPVE+I EAR+DGPF DLFDFCAR+DLK++NKR ++ LI +GALD LGP+         
Sbjct: 843  EGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLICAGALDALGPH--------- 893

Query: 905  ANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKELTL- 963
                  RA ++  + EAI AA+Q A+    G  D+FG L    ++D   + ++  E T  
Sbjct: 894  ------RASMMATLPEAISAADQHAKAEAIGQHDMFGLL----NSDPEDSKQQFVECTPW 943

Query: 964  --KERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTV--AGMIIALRV 1019
              K  L+GE++TLGLYLTGHPI++Y  E++ +   R+ D+ P    +TV  AG+++A RV
Sbjct: 944  PDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRV 1003

Query: 1020 MKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRL 1079
            M  K+G KMG +TLDD+S R+E  LF +AF     LL+ D +++ EGEVS DDF+GG R+
Sbjct: 1004 MLTKRGSKMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRM 1063

Query: 1080 RIKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHR-GACPVTMEYTGSDAK 1138
              + ++ + +AR++ A +L + ++   L    L  + + +   R GA PV + Y+ + AK
Sbjct: 1064 TARNIIDISEARSHFASALEIDLEASQLTPSMLDSIEQAISPWRNGAVPVLINYSQAQAK 1123

Query: 1139 AMLQFGETWRIDPADGLIQALRDQFGRDNV 1168
               +  E WR++P+D L+ AL    G   V
Sbjct: 1124 GQFRLAEAWRVNPSDELVFALESLLGPHKV 1153