Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1152 a.a., DNA polymerase III subunit alpha from Herbaspirillum seropedicae SmR1

 Score = 1071 bits (2769), Expect = 0.0
 Identities = 587/1184 (49%), Positives = 788/1184 (66%), Gaps = 53/1184 (4%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H+EYS+VDGLVRI  +VK        A+AVTD  N+  +V+FYK A G G+KPI
Sbjct: 6    FVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGKGVKPI 65

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV---- 120
             G DLW++N        R+ +L  N  GY  L E++S+ +++ Q  G   +  EW+    
Sbjct: 66   AGCDLWITNDADREKPFRLLVLIKNRHGYLQLCEVLSQAWLNNQYKGRAEVRMEWLDALR 125

Query: 121  -AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEE 179
              E   GLI LS A  G+IG A+  GN  +AE  A+ W ++FP  FYLE+QR  + N E 
Sbjct: 126  HQEGGNGLIALSGAAMGDIGQAIDNGNLAQAEACARRWAEIFPGAFYLELQRAGQANMEV 185

Query: 180  HLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYL 239
             +  +VAL  KLG P VAT+ ++F   E+F AHE R CI EG  + + RR + ++E+QY 
Sbjct: 186  QVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIMANARRVRRFNEQQYF 245

Query: 240  KSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDG 299
            KS  EM ELF+DLP A+ N+VEIAKRCN+ ++LGK  LP+FP PDGMTID++    +  G
Sbjct: 246  KSQAEMVELFADLPGAVANTVEIAKRCNLVLQLGKPQLPDFPTPDGMTIDDFLVAQTKAG 305

Query: 300  LEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVP 359
            LE RL  L P +   + E +R  Y  RL FE + II+M FPGYFLIV DFIQWAKNNGVP
Sbjct: 306  LEVRLKELFPNEA--EREKQRPRYEARLEFENNTIIKMKFPGYFLIVADFIQWAKNNGVP 363

Query: 360  VGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEY 419
            VGPGRGSGAGSLVAY   ITDLDPL Y+LLFERFLNPERVSMPDFD+DFC +GRDRVI+Y
Sbjct: 364  VGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQY 423

Query: 420  VAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAY 477
            V ++YG+ AVSQI TFG+MAAK  +RDV RV    Y   D +SK+IPF+ G  +TL  A 
Sbjct: 424  VKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLADAI 483

Query: 478  EQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGG 537
            E+E +L++ ++ +EE  ++  +A+++EG+ RN+G HAGGV+IAP KLTDF P+Y      
Sbjct: 484  EEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDS 543

Query: 538  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINR-DRAKVNEEPLDIAFIPLDDK 596
            G+V+Q+DKDDVEA GLVKFDFLGL TLTI+D A++ I   D A  +    D+A +PLDD+
Sbjct: 544  GVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPAMAD---FDLAKLPLDDR 600

Query: 597  PTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINR 656
            P+Y LL KA+T AVFQLESRGM+ ++K  +PD  ED+IALVAL+RPGP+   ++ DF  R
Sbjct: 601  PSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMD--LIPDFCKR 658

Query: 657  KHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK 716
            KHG    A+ + D + EG   +L+ TYGI++YQEQVMQ+AQV+ GY+LGGAD+LRRAMGK
Sbjct: 659  KHGE---AFDYPDPRTEG---ILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGK 712

Query: 717  KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776
            KK EEMAK R  F EG A N +D   A  IFDL+EKFAGYGFNKSH+AAY L+SY TA+L
Sbjct: 713  KKAEEMAKHRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALLSYYTAYL 772

Query: 777  KAHYPAPFMAAVLSADMHNTDKVVTLIEE-VRTMKLRLDAPDVNASEFKF-TVNDEGR-- 832
            KAH+PA FMAA LS  M +TDKV  LIE+ +   KL +  PD+N S+++F  V + G+  
Sbjct: 773  KAHHPAAFMAANLSLAMEDTDKVKILIEDAIDICKLAILPPDINKSDYRFMPVGEPGKKA 832

Query: 833  --IIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALD 890
              I YGLGA+KG G+  +EAI EAR+ GPFKDLFDF  RVD K+IN+RT+D LIR+GA D
Sbjct: 833  TQIRYGLGAVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIRAGAFD 892

Query: 891  RLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDAD 950
                            +D  RAVL  ++  A ++AEQ  ++  +    LFGG   + D +
Sbjct: 893  CF-------------KVD--RAVLQASVNLAWESAEQAEKS--ANQVSLFGG--DDSDLE 933

Query: 951  VYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTV 1010
                + +    + K+RL  EK  LG YL+GH    YE E+RRF R +I  L+P+ + +++
Sbjct: 934  APLEYVQVPPWSDKQRLTEEKGALGFYLSGHLFSAYEKEVRRFVRTKIASLEPSWEPRSL 993

Query: 1011 AGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSN 1070
            AG+I  +RV   ++G K+   TLDD +G IEA+++ + F   + L++ D ++VV G+VS 
Sbjct: 994  AGIITGVRVQMTQRG-KLVICTLDDGTGVIEATIYNELFEPFKHLIKEDELLVVSGKVSE 1052

Query: 1071 DDFSGGLRLRIKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHR--GACPV 1128
            D F+GGLR+   +VM +  AR      + + +  +A+  + LR   + L  HR     P 
Sbjct: 1053 DRFNGGLRVAADKVMDLGAARIQYGVRMVVSI-NKAIDPNHLR---DTLSAHRQEQGLPF 1108

Query: 1129 TMEYTGSDAKAMLQFGETWRIDPADGLIQALRDQFGRDNVFLQY 1172
             M Y  +DA   +  G+ WRI+P+D L   L   FG++ V ++Y
Sbjct: 1109 VMRYQQADAACEVVLGDAWRINPSDSLQSTLVASFGKEAVVVEY 1152