Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  895 bits (2312), Expect = 0.0
 Identities = 493/1184 (41%), Positives = 709/1184 (59%), Gaps = 72/1184 (6%)

Query: 3    ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIK 62
            + FVHL  HTEYSL+DG +R+K L        M A A+TD  N+     FY      GIK
Sbjct: 2    SDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIK 61

Query: 63   PICGADLWLSNKDPDNPLSRIS-------LLAMNGVGYRNLTELISRGFIDGQRNGSIII 115
            PI G +++++  D  +  S  +       LLA N  GY NL  L++RGF +G      + 
Sbjct: 62   PIIGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHYKPRV- 120

Query: 116  EREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRP 175
            ++E + E S+GLI LSA   GE+   L+          A+E+  +FP RFYLE+Q     
Sbjct: 121  DKELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSNGIK 180

Query: 176  NDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSE 235
              E      + LA     PLVATND  ++   D EAH+  +CI     +DDP+R +  + 
Sbjct: 181  EQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETR 240

Query: 236  EQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKV 295
            E Y KS EEM + F+ +PEA+ N+  IA+ CNIE+  GK+F P + +P+GMT+D  F+++
Sbjct: 241  ELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEFQRL 300

Query: 296  SFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKN 355
            + +GL++RL     +DT +      + Y DRL +EL +I  MGFPGYFLIV DFI WAKN
Sbjct: 301  AEEGLKKRLEKHPDRDTID-----HKAYWDRLEWELKVITDMGFPGYFLIVQDFINWAKN 355

Query: 356  NGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDR 415
            NG+PVGPGRGS AGSLVA+  +IT+LDP+ YDLLFERFLN ERVSMPD DVDFC   R  
Sbjct: 356  NGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRTE 415

Query: 416  VIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEK 475
            VI YVAEKYG ++VSQI TFG M AKAV+RDV R  G S+G  DR++K+IP ++ MT++K
Sbjct: 416  VIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTIKK 475

Query: 476  AYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEE 535
            A E E  L    + D +  ++ D++ +LEG+ R+   HA GVVI+   ++++ P+Y  ++
Sbjct: 476  ALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGKK 535

Query: 536  GGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDD 595
             G  VTQFD   VE  GLVKFDFLGLRT+T++  AL  I R      + P D+  + LDD
Sbjct: 536  -GETVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQ----GKTPPDLDTLSLDD 590

Query: 596  KPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFIN 655
              TY L  + +T  VFQ+ES GM++ ++ L+P C +D+IA++AL+RPGPL SGMVD+FI 
Sbjct: 591  AETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIK 650

Query: 656  RKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMG 715
            RKHG   + YP        L+  L PTYG+I+YQEQVMQIAQ++  YTLGGAD+LRRAMG
Sbjct: 651  RKHGEVPVTYP-----VPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMG 705

Query: 716  KKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAW 775
            KK  E MA++R  F++G   N+I  + A  IFDL+EKFA YGFNKSHSAAY L+SY TA+
Sbjct: 706  KKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAF 765

Query: 776  LKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIY 835
            LK H+P  FMAA+L+++M N DK++  +   + M + +  P+V  S  +FTV+ EGRI++
Sbjct: 766  LKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVH-EGRIVF 824

Query: 836  GLGAIKGVGEGPVEAITEARQD-GPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGP 894
            GLG IK VG+  +  I +AR++ GP+  L D C RV+L+++ KR ++ LI+ GA D LG 
Sbjct: 825  GLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLG- 883

Query: 895  YFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYG- 953
                            RA +L +++  +  A++  +  DS    LF    ++E+  V   
Sbjct: 884  --------------CTRAGMLASLDTVVARAQKKLKERDSNQVSLF--TMIKEEPKVCPG 927

Query: 954  -----NHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ 1008
                   + A E    ++L+ EK+ LG +LT HP+  Y  E+ R    R+  L+ ARD  
Sbjct: 928  IGFDCEEQTAPEWPDDQKLRFEKEALGFFLTSHPLQPYRKELFRL---RLTPLEEARDMP 984

Query: 1009 -----TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVV 1063
                   A ++  L+ +  KKG +M F  ++D +   E   F + F  A+ LL++D  ++
Sbjct: 985  PGAEIRTAVLVTTLKELMTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLL 1044

Query: 1064 VEGEVSN--DDFSGG--------------LRLRIKRVMSMEDARTNLAESLRLKVKTEAL 1107
            +EG +    DD +GG              +++   +VM +  A  +  E + +++ T  +
Sbjct: 1045 LEGTLDKKADDGNGGQGQGGDDEEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRM 1104

Query: 1108 KGDQLRWLGELLKRHRGACPVTMEYTGSDAKAMLQFGETWRIDP 1151
              D L  L  +L++H+G  PV +     ++  +LQ G  W + P
Sbjct: 1105 SADYLAGLRAILEKHKGTVPVNVHMVVDESLCLLQLGPRWTVQP 1148