Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1164 a.a., DNA polymerase III, alpha subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  789 bits (2037), Expect = 0.0
 Identities = 497/1194 (41%), Positives = 682/1194 (57%), Gaps = 95/1194 (7%)

Query: 2    PASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGI 61
            P  F+HLRLHTEYSL++G +R+K L   +    MPA+A+TD NNM + ++  +    AGI
Sbjct: 4    PPRFIHLRLHTEYSLLEGAMRLKKLPDLVAAAEMPAIAITDTNNMFAALEASEALSKAGI 63

Query: 62   KPICGADLWLSNKDPDNPLSR------ISLLAMNGVGYRNLTELISRGFIDGQRNGSIII 115
            +PI G  + ++  DP  P  R      + LLA    GY NL  L +  ++D       I 
Sbjct: 64   QPIIGCQVDVAF-DPAAPGERPRAPAPVVLLAQTEAGYENLMALNTCLYVDKGGQLPQIT 122

Query: 116  EREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRP 175
              E  A  S+ LI L+    G +G  L  G   +A+ L     ++F DR Y+E+ R   P
Sbjct: 123  VEELAANGSD-LICLTGGPRGPLGRFLSAGQRPKAQALMARLAEIFGDRLYVELHR--HP 179

Query: 176  NDE---EHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKN 232
             D    E     + LA  +  PLVATNDV F     +EAH+  +CI EG  +D     + 
Sbjct: 180  GDPLCAETEPGFLDLAYDMNLPLVATNDVYFPDPGMYEAHDALICIAEGAYVDQQAPRRR 239

Query: 233  YSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYF 292
             +++ Y KS  EMA LF+DLPEALEN++EIA+RC  +       LP F   +     E  
Sbjct: 240  LTDQHYFKSQTEMATLFADLPEALENTIEIARRCAFKAFKRDPILPRFAEDEV----EEL 295

Query: 293  RKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQW 352
            R+ S +GL+ RL+V+      E+YE        RL FELDII  MGFPGYFLIV DFI+W
Sbjct: 296  RRQSREGLKARLAVIPHAAPVEEYEK-------RLEFELDIIEGMGFPGYFLIVADFIKW 348

Query: 353  AKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDG 412
            AK+ G+PVGPGRGSGAGSLVAY   ITDLDPL Y LLFERFLNPER+SMPDFD+DFCMD 
Sbjct: 349  AKDRGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDIDFCMDR 408

Query: 413  RDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFE--VG 470
            R+ VI YV EKYGR+ V QIITFG++ +KA +RDV RV    YG  DRLSKMIP E    
Sbjct: 409  REEVIHYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKP 468

Query: 471  MTLEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPI 530
            +++EKA + E  L +  K +E    +     ++EG++RN   HA GVVI    L    P+
Sbjct: 469  VSIEKALKDEPRLAEEAKAEEVVERLLKYGMQVEGLLRNASTHAAGVVIGDRPLDKLVPL 528

Query: 531  YCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTI---NRD---------- 577
            Y D       TQF+   VE AGLVKFDFLGL+TLT+I+ A+K I    RD          
Sbjct: 529  YQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAVKLIRATGRDLHVAADGTEL 588

Query: 578  RAKVNEEPLDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALV 637
             +       DI  IPLDD+ +Y L   A+T AVFQ+ES GM + ++++KP C+ED+IALV
Sbjct: 589  YSPAPGTENDINAIPLDDEASYKLYASAKTVAVFQVESTGMMDALRRMKPTCIEDIIALV 648

Query: 638  ALFRPGPLQSGMVDDFINRKHGRAE--LAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQI 695
            AL+RPGP+++  +  +   K+G +E  L +P  D+       +L  T GII+YQEQVMQI
Sbjct: 649  ALYRPGPMEN--IPKYCEVKNGLSERDLLHPTVDH-------ILDETQGIIVYQEQVMQI 699

Query: 696  AQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAG 755
            AQ MAGY+LGGADMLRRAMGKK  E M  +R  F+ G A N +D D A  ++ L++KFA 
Sbjct: 700  AQEMAGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAAENGVDKDKALEVWHLLDKFAN 759

Query: 756  YGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRT-MKLRLD 814
            YGFNKSH+AAY +VSYQTAWLKA++P  FMA V++ D+H TDK+    EEVR  + L + 
Sbjct: 760  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYAEEVRRGLGLEIV 819

Query: 815  APDVNASEFKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKR 874
             P VN S   F+V  EG+++YGLGA+K VG   +E +   R D PF  LFD   RVDLKR
Sbjct: 820  PPCVNRSRASFSV-AEGKLVYGLGALKNVGADAMELVVTGRGDKPFATLFDLARRVDLKR 878

Query: 875  INKRTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDS 934
            + KR L+ L R+GA D+L P               NR  +  +++  +  +        S
Sbjct: 879  VGKRPLEMLARAGAFDQLDP---------------NRRRVFQSLDGLVAYSAAIHEQRAS 923

Query: 935  GHADLFGGLFVEEDADV-YGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRF 993
                LFG    E   D+         +    ERL  E   +G YL+GHP+D+Y G ++  
Sbjct: 924  AQVSLFG----EAGEDLPEPRILPCDDWLPAERLAEEHKAIGFYLSGHPLDDYMGALK-- 977

Query: 994  ARQRIIDLKP-ARDTQT------VAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFA 1046
             R+ ++ L+  AR  +T      +AG I   +  K+ +G++  F+   D +G  E ++F+
Sbjct: 978  -RKGVVTLEALARKVETGAAVAKIAGTIAGRQERKSARGNRFAFVQASDPTGLYEVTVFS 1036

Query: 1047 DAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDARTNLAES---LRLKVK 1103
            D     +  L+T   VV++ E + +  +  L+L  +    ++DA  +   +   LR+ V+
Sbjct: 1037 DTLEKVRDHLETGKNVVMQVEATLE--ADQLKLLCRSAAPIDDAVADARGAMMGLRVFVE 1094

Query: 1104 TEALKGDQLRWLGELLK----RHRGACPVTMEYTGSD--AKAMLQFGETWRIDP 1151
             EA   +    LG + +    R RG  PVT+     D   +  +  GE   ++P
Sbjct: 1095 AEAALPNIAGLLGRMAEDPSIRTRG--PVTLALIDPDLPGEVDVLLGEALPVNP 1146