Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1083 a.a., DNA polymerase III alpha subunit DnaE2 from Caulobacter crescentus NA1000

 Score =  328 bits (841), Expect = 1e-93
 Identities = 289/1109 (26%), Positives = 502/1109 (45%), Gaps = 112/1109 (10%)

Query: 2    PASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGI 61
            P  +  L+  T +S + G    + L  T   + + A+ + D+N++  +V+ +  A    I
Sbjct: 3    PPVYAELQATTNFSFLRGASHAEELALTAEALGLTAIGIVDRNSLAGVVRAWTAAKRRSI 62

Query: 62   KPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV- 120
            + + G  L   +  P      +     +   +  LT L++ G +  ++    +  R+++ 
Sbjct: 63   RVLTGCRLDFMDGAPS-----LLCYPTDREAFGRLTRLLTIGQLRAEKGECHLTWRDFLD 117

Query: 121  -AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEE 179
             +E   GLI+     +      L        ++  + W         L   R     D +
Sbjct: 118  HSEGQLGLIVPPRVLDDSFEQHL---TRMAGDLRGRSW---------LAASRAYAARDLQ 165

Query: 180  HLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYL 239
             L    +L    GAP+VATNDV +   E     +   C+ E  A+ +       + E+++
Sbjct: 166  RLARLESLGRTSGAPIVATNDVLYHGPERRPLQDVISCVREHCAIQEAGFRLEANAERHI 225

Query: 240  KSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDG 299
            KS EEMA LF   P A+E +VEI +R   ++K  +   P+ P+P G T  ++   +++ G
Sbjct: 226  KSPEEMARLFDRWPRAVERTVEIVERIGFDLKDIREQYPDEPVPPGKTAMQHLTDLTWKG 285

Query: 300  LEERL-SVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGV 358
               R  + + PK T +  E            EL +I +M +P YF+ V D ++ A++ G+
Sbjct: 286  AAWRYPNGVSPKVTAQIQE------------ELRLIEKMDYPNYFITVHDIVREARSMGI 333

Query: 359  PVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIE 418
             +  GRGS A S V +   +T +DP E+ LLF RF++  R   PD DVDF  D R+ V++
Sbjct: 334  -LCQGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDFEHDRREEVMQ 392

Query: 419  YVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYE 478
            YV ++YGR   +   T      ++ IRDV    GK+ GL + ++ ++   V  +      
Sbjct: 393  YVFQRYGRAYAAICGTVIHYRPRSAIRDV----GKALGLTEDVTSLLAGTVWGSWGDGLP 448

Query: 479  QEEILRDFIKIDEEAAEI---WDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEE 535
            ++ +      +D +A EI     +A  L G  R++ +H GG V+   +L +  PI     
Sbjct: 449  EDHLRN--AGLDPKAPEIARAVGLANDLIGFPRHLSQHVGGFVLTKRRLDETVPIGKAAM 506

Query: 536  GGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDD 595
                  ++DKDD+++ GL+K D L L  L  I  A+  +  D  +  +   D+A IP + 
Sbjct: 507  KDRTFIEWDKDDIDSLGLMKVDILALGMLHAIQRAMTMLREDHGQ--DWLKDLADIPKEV 564

Query: 596  KPTYTLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFIN 655
               Y +L  A++  VFQ+ESR    ++ +L+P    DL+  VA+ RPGP+Q  MV  ++ 
Sbjct: 565  PGVYDMLCAADSVGVFQVESRAQMSMLPRLRPREFYDLVIQVAIVRPGPIQGDMVHPYLK 624

Query: 656  RKHGRAELAYPHSDYQY---EGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRR 712
            R++    + +P    ++   + L+ +L  T+G+ L+QEQ M +A   A +T   AD LR+
Sbjct: 625  RRNKEEPVDWPKPSPEHGPPDELQEILGKTFGVPLFQEQAMSLAIEAAKFTPDEADGLRK 684

Query: 713  AMGK-KKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSY 771
            AM   +        R  FIEG      +   A   F  +E F+ YGF +SH+A++  + Y
Sbjct: 685  AMATFRNLGSPDAYRNKFIEGMVGRGYERAFAERCFKQIEGFSHYGFPESHAASFAKLVY 744

Query: 772  QTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVN--- 828
             +AW+K  +P  F AA+++A      +   L+ + R   + +  PD+  S++  T+    
Sbjct: 745  VSAWIKWAWPDVFCAALINAQPMGFYQPAQLVRDAREHGVEVLPPDILTSDWDCTLAPIS 804

Query: 829  ---------------DEGR-----IIYGLGAIKGVGEG-PVEAITEARQDGPFKDLFDFC 867
                            E R     +  G   IKG+ E   +  + +AR +G         
Sbjct: 805  TGFRPPRVRHDKVACQETRPRWKAVRLGFRQIKGLRETLDIPPLLKARGEG--------- 855

Query: 868  ARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQ 927
                  R       G +   AL+ L      E  A+ A++  +R        EA+ A + 
Sbjct: 856  -----ARTPAEFAQGGVPQKALELLA-----EADAF-ASVGLSR-------REALWAVKG 897

Query: 928  TARTHDSG-HADLFGGLFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEY 986
                H +   A L  GL + E+          +E+    R      T  L L  HPI  Y
Sbjct: 898  LKGEHKAPVQAPLLAGLPLFEERVALPAMAATQEVAEDYR------TTSLSLKAHPIGFY 951

Query: 987  EGEIRR---FARQRIIDLKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEAS 1043
               +        +R++ LK      +VAG+++  +     KG  + F+TL+D +G   A 
Sbjct: 952  RSMLAARGVVPAERLLSLKDGARV-SVAGLVLIRQRPGTAKG--VVFVTLEDETGVANAV 1008

Query: 1044 LFADAFHSAQSLLQTDAMVVVEGEVSNDD 1072
            ++ D F +A++++ T + ++V G V   D
Sbjct: 1009 VWKDRFDAARNVVMTASFLIVHGRVQRAD 1037