Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1267 a.a., DNA polymerase III alpha subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  638 bits (1645), Expect = 0.0
 Identities = 435/1243 (34%), Positives = 644/1243 (51%), Gaps = 150/1243 (12%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKF--YKNAMGAG-- 60
            FVHL +HT+YSL+DG   +  LV   +   M  +AVTD  NM  + +F  Y N   +G  
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 61   -----------------------------------------IKPICGADLWLSNKD---- 75
                                                      KPI G +++++ +     
Sbjct: 64   GEIKDLKKRIAGIEAGTVECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 76   ---PDNPLSRISLLAMNGVGYRNLTELIS----RGFIDGQRNGSIIIEREWVAEASEGLI 128
               PD     + +LA N  GY NL +L+S    RG+    R      +R  + +  EGLI
Sbjct: 124  EGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYMRPRT-----DRSELEKYHEGLI 178

Query: 129  MLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTN----RPNDEEH-LHA 183
            + SA   GE+   +  G   EAE   + +  +F D +YLE+QR      R N E + L  
Sbjct: 179  VCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQV 238

Query: 184  AV-----ALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQY 238
             V       A K    L+ TNDV F+ +E+ EAH+  +C+  G+ LDDP R   Y+++++
Sbjct: 239  NVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRML-YTKQEW 297

Query: 239  LKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDE-----YFR 293
            +K+ EEM ELF+D+PEAL N++EI  +           +P F IP+    +E     Y  
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 294  KVSFDGL--EERLSVLLPKDTTE-------------------DYEAK------RQVYVD- 325
            K  FD    +E  +V+L ++  +                   DY AK      +++Y D 
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 326  -------RLNFELDIIIQMGFPGYFLIVMDFIQWAKNN-GVPVGPGRGSGAGSLVAYVQK 377
                   RLNFEL I+  MGFPGYFLIV DFI  A++  GV VGPGRGS AGS VAY   
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 378  ITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGS 437
            IT +DP++YDLLFERFLNP+R+S+PD DVDF  DGR  V+ +V  KYG+  V+ IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 438  MAAKAVIRDVARVQGKSYGLADRLSKMIPFEV---GMTLEKAYEQ-EEILRDFIKIDEEA 493
            MA K  I+DVARVQ      +DRL+K++P ++    + L  A E   E+       D   
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 494  AEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYC--DEEGGG--LVTQFDKDDVE 549
             +    A+ LEG VR  G HA G +I    +TD+ P+    D+E G   LVTQ++   +E
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 550  AAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQKAETTA 609
              GL+K DFLGL+TL+II  A++ I   R+      +D+  I + D  TY L     T  
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSL----EIDVDQIDITDPATYKLYSDGRTIG 713

Query: 610  VFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSD 669
             FQ ES GM++ +++L+P   EDLIA+ AL+RPGP+    + DFI+RKHGR  +     +
Sbjct: 714  TFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMD--YIPDFIDRKHGRKPI-----E 766

Query: 670  YQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGF 729
            Y    ++  L  TYGI +YQEQVM +++++A +T G +D LR+AMGKK  +++   +  F
Sbjct: 767  YDIPVMEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKF 826

Query: 730  IEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVL 789
            IEG   N  D  +   I+   EKFA Y FNKSH+  Y  V+YQTA+LKA+YP+ +MAAV+
Sbjct: 827  IEGGRKNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVM 886

Query: 790  SADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAIKGVGEGPVE 849
            S  + N   +  L++E + M ++   PDVN S  KFTVN +G I +GLGA+KGVGE  V+
Sbjct: 887  SRSLSNITDITKLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQ 946

Query: 850  AITEARQ-DGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQANID 908
            +I E R  +GPFK +FDF  RV+L   NK+ ++ L  +G  D       ++   Y A   
Sbjct: 947  SIVEERNTNGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQ---YFAVNS 1003

Query: 909  RNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDA--DVYGNHRKAKELTLKER 966
            +    L T M    +  E      +S    LFGG  V + A  ++     +  +L   ER
Sbjct: 1004 KGEVFLETLMRYGNRYQEDKRAAINS----LFGGANVVDIATPEIPQGVERWGDL---ER 1056

Query: 967  LKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKP----ARDTQTVAGMIIALRVMKN 1022
            L  E+D +G+YL+ HP+DE+   +      R+ DL+     A    T+ G++ ++R   +
Sbjct: 1057 LNKERDLVGIYLSAHPLDEFAIVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVS 1116

Query: 1023 KKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDF-SGGLRLRI 1081
            K G+  G   ++D SG  E   + + + + Q  L     + ++       +    L ++I
Sbjct: 1117 KNGNPYGIAKIEDYSGSTEIPFWGNDWVTYQGYLNEGTFLYIKARCQAKQWRQDELEVKI 1176

Query: 1082 KRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHRG 1124
              +  + D +  L + + + +    L    +  L  L K H G
Sbjct: 1177 TSMELLPDVKEELVQKITIIIPLSVLNSGLITELATLTKEHPG 1219