Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1185 a.a., DNA polymerase III subunit alpha from Bifidobacterium breve UCC2003

 Score =  692 bits (1785), Expect = 0.0
 Identities = 433/1214 (35%), Positives = 643/1214 (52%), Gaps = 95/1214 (7%)

Query: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63
            +FV L  HT YSL+DG  +I  L K    + MPAV +TD  NM    + Y N +  G+KP
Sbjct: 7    NFVQLHNHTHYSLLDGASKIPDLAKRAAELEMPAVGITDHGNMHGAYEMYTNCVANGVKP 66

Query: 64   ICGADLWLSNKDPDNPLSRI---------------------SLLAMNGVGYRNLTELISR 102
            I G + +++ +      SR+                     ++ A N  G  NL +  S 
Sbjct: 67   IIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSV 126

Query: 103  GFIDGQRNGSIIIEREWVAEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVF- 161
              ++G+      +++E ++  S+G+I  S    G I   L  G   EA   A E+  +F 
Sbjct: 127  ANLEGRVMRYPRMDKEVLSTYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 162  PDRFYLEVQRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEG 221
             D F++E+       + +     + +A KL APL+ATND  ++  ED  A +  +CI  G
Sbjct: 187  KDNFFIELMDHGLTIENQVTDDLLTIAKKLDAPLLATNDSHYVHAEDAGAQDAMLCINSG 246

Query: 222  RALDDPRRSKNYSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKH----FL 277
              LDDP R K      Y+K+AEEM ELF D P+A +N++ IA+RCN  V    H    F+
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLLIAERCN--VMFDDHEDGAFM 304

Query: 278  PNFPIPDGMTIDEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQM 337
            P FP P+G      F K   +GLE+R +   P +  +           + ++E  +I QM
Sbjct: 305  PQFPCPEGWDETSLFLKKVEEGLEKRYNGNPPLNVLK-----------QADYECGVICQM 353

Query: 338  GFPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPE 397
             F GYFL+V D+IQWAK++G+ VGPGRGS AG++VAY   IT+LDPL++ L+FERFLNPE
Sbjct: 354  QFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPE 413

Query: 398  RVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGL 457
            RVS+PD DVDF  +GR RVIEY  EKYG + V+Q + +G++  K  ++D AR+ G  + +
Sbjct: 414  RVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSV 473

Query: 458  ADRLSKMIP-----------FEVGMTLEKAYEQEEILRDFIKIDEEAAEIWDMARKLEGV 506
             ++++K +P            ++     K Y +    R+    D +A  I + A+ +EG+
Sbjct: 474  GEKVTKALPPAATGGKDISLHDIFDPSAKRYAEAREFREMYDSDPDAKRITEEAKGIEGL 533

Query: 507  VRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTI 566
            +R  G HA   ++    +TD SP+  +   G + T F+    E  GLVK DFLGL  LT+
Sbjct: 534  IRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTV 592

Query: 567  IDWALKTINRDRAKVNEEP-LDIAFIPLDDKPTYTLLQKAETTAVFQLESRGMKELIKKL 625
            I   LK I     + N +P +D   IPLDD  TY L+ + +T  VFQL+S GM+ L+K L
Sbjct: 593  IHDTLKNI-----EANGKPAIDYTKIPLDDAETYKLMARGDTLGVFQLDSDGMRSLLKTL 647

Query: 626  KPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGI 685
            KPD   D+ AL+AL+RPGP+      ++  RK+G  ++   H + + E LK VL  TYG+
Sbjct: 648  KPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELE-EPLKQVLDETYGL 706

Query: 686  ILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGN 745
            I+YQEQV   A+++AGY+LG AD+LRRAMGKKKPE +AK++  F  G   +    + A  
Sbjct: 707  IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAANA 766

Query: 746  IFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEE 805
            ++D++  F+GY FNK+HSAAYGL+SY TA+LK HYP  FMAA+L     N DK    + E
Sbjct: 767  VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 826

Query: 806  VRTMKLRLDAPDVNASEFKFT-VNDEGRIIYGLGAIKGVGEGPVEAITEARQD--GPFKD 862
             R M +++ +PDVN S + ++ V D  R  +GLGAI+ VG+  V  I   R+   G F +
Sbjct: 827  ARRMGIQVLSPDVNESVYAYSAVGDVVR--FGLGAIRNVGDKAVADIIAEREGPRGKFVN 884

Query: 863  LFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAI 922
              DF  RV L  +N+R ++ LI++GA D               +ID NR  L T  E AI
Sbjct: 885  FMDFIRRVPLTALNRRLVESLIKAGAFD---------------SIDPNRRALFTVHEAAI 929

Query: 923  KAAEQTARTHDSGHADLF-----GGLFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLY 977
             +     R    G  DLF     GG     DA V       +E   K +L  E++ LGLY
Sbjct: 930  DSVVSLKRKQAEGQFDLFSDADDGGAEAMGDASV--TVPDIEEWDKKTKLNFEREMLGLY 987

Query: 978  LTGHPIDEYEGEIRRFARQRIIDLKPARDTQ------TVAGMIIALRVMKNKKGDKMGFI 1031
            ++ HP+   +  +       I  L     T       T+AG+I  +    +KKG+    +
Sbjct: 988  VSDHPLSGMQSILASLREMSIAHLIDRAKTMGEGQQVTLAGLITGVDRRVSKKGNPWAIV 1047

Query: 1032 TLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRIKRVMSMEDAR 1091
            T++D    I+   F   + +A + L  DA+V + G+V   D +  +R    +V ++E   
Sbjct: 1048 TIEDMESSIQCMFFGKVYEAAAAELAVDAIVQIRGQVELRDETVSMRATELQVPTLE--- 1104

Query: 1092 TNLAESLRLKVKTEALKGDQLRWLGELLKRHRGACPVTMEYTGSDAKA-MLQFGETWRID 1150
            +     L + +   AL    +  LG++L  H G C V +        A +L FG+ +R+ 
Sbjct: 1105 SEDERPLTITLPHAALDRQHMMQLGQVLTNHPGYCEVHLAVMDEKGNAQVLTFGDRFRVK 1164

Query: 1151 PADGLIQALRDQFG 1164
                L   ++  FG
Sbjct: 1165 RDTSLFAEIKILFG 1178