Pairwise Alignments

Query, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

Subject, 1192 a.a., DNA polymerase III subunit alpha from Burkholderia phytofirmans PsJN

 Score = 1060 bits (2741), Expect = 0.0
 Identities = 576/1222 (47%), Positives = 792/1222 (64%), Gaps = 92/1222 (7%)

Query: 5    FVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
            FVHLR+H+E+S+ DG+VR+  +VK        A+A+TD  N   LV+FYK A G G+KPI
Sbjct: 9    FVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEARGKGVKPI 68

Query: 65   CGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEA- 123
             G D+W++N D  +  SR+ LL  +  GY NL EL+S+  +  Q  G   +E  W+    
Sbjct: 69   AGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVEAGWLESGL 128

Query: 124  SEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHA 183
             EGL+ LS A++G++G+AL  GN + A+  A  W +VFP  FY+E+QR+ +P  E+++  
Sbjct: 129  GEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIELQRSGQPGGEQYVQQ 188

Query: 184  AVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAE 243
            AVALA  L  P+VAT+ ++F+  +DF AHE RVCI EG  L +PRRSK ++ EQY ++ E
Sbjct: 189  AVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTSEQYFRTQE 248

Query: 244  EMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEER 303
            EMA LF+D+P AL NSVEIAKRCN+ ++LGK  LP FP PDGM++D+Y  ++S +GLE+R
Sbjct: 249  EMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKEGLEKR 308

Query: 304  LSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPG 363
            L  L P     + EA+R+ Y  RL FE   II+MGFPGYFLIV DFI WAKNNGVPVGPG
Sbjct: 309  LEQLYPD--AAEREAQRETYYARLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPVGPG 366

Query: 364  RGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEK 423
            RGSGAGSLVAY   +TDLDPL Y+LLFERFLNPERVSMPDFD+DFC  GRDRVI+YV EK
Sbjct: 367  RGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYVKEK 426

Query: 424  YGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVG--MTLEKAYEQEE 481
            YG +AVSQI TFG+MAAKA +RD+ RV    Y   D ++K+IPF+ G  +T+  A ++E 
Sbjct: 427  YGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMKEEP 486

Query: 482  ILRDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVT 541
            +L++    ++E  ++ ++A+++EG+ RNVG HAGGV+IAP KLTDF P+Y   +  G+V+
Sbjct: 487  LLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESGVVS 546

Query: 542  QFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTL 601
            Q+DKDDVEA GLVKFDFLGL TLTI+DWA + I   R   +++   +  +PLDD  ++++
Sbjct: 547  QYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIR--RLDPSKQDWSLGQVPLDDPASFSI 604

Query: 602  LQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRA 661
            L+KA T AVFQLESRGM+ ++K  +PD  ED+IALVAL+RPGP+   ++  F  RKHGR 
Sbjct: 605  LKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMD--LIPSFCARKHGRE 662

Query: 662  ELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEE 721
             + YP        ++ VL  TYGI++YQEQVMQ+AQ++ GY+LGGAD+LRRAMGKKK EE
Sbjct: 663  VVEYPD-----PRVESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEE 717

Query: 722  MAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYP 781
            MA+ R  F +G A N + A+ A  IFDL+EKFAGYGFNKSH+AAY L++Y TAWLKAH+P
Sbjct: 718  MAEHRELFRQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHP 777

Query: 782  APFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKF--TVNDEGR----IIY 835
            A FMAA +S  M +TDKV  L E+    K+ +  PDVN S ++F      +G+    I Y
Sbjct: 778  AEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEPDGKRSKTIRY 837

Query: 836  GLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPY 895
            GLGAIKG G+  +E I  AR++GPF D+FDFC RVD + +N+RT++ LIR+GA D L   
Sbjct: 838  GLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAFDTL--- 894

Query: 896  FHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNH 955
                          NRA L+ ++  A++AAEQ +         L  GLF   DA   G+ 
Sbjct: 895  ------------HANRAQLIASVSLAMEAAEQASAN------ALQAGLFDMGDAPSQGHE 936

Query: 956  R-KAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMI 1014
                 E   K++L+ EK  LG YL+GH  D Y+ E+RRF RQ+I +LK  RD + VAG+I
Sbjct: 937  LVDEPEWPEKKKLQEEKAALGFYLSGHLFDAYKNEVRRFVRQKIGELKEGRD-KLVAGVI 995

Query: 1015 IALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFS 1074
             +LR    ++G KM    LDD +G+ E ++F + F + + L + D ++VV+G+  ND F+
Sbjct: 996  ASLRTQMTQRG-KMLIALLDDGTGQCEVTVFNETFEAHKQLFKEDELLVVQGQARNDAFT 1054

Query: 1075 GGLRLRIKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGELLKRHRG--------AC 1126
            GG+R  +  VM +  AR   AE++++++   A   D L  L  +L+ H          A 
Sbjct: 1055 GGIRFTVDTVMDLGRARCRYAEAVKVQMNGNA---DALA-LRRVLEAHSAGKDEPQAVAA 1110

Query: 1127 P------------------------------------VTMEYTGSDAKAMLQFGETWRID 1150
            P                                    V + Y   +A+  ++ G+ WR+ 
Sbjct: 1111 PAASSRGGNGGNGGGRNGGGYGGGGQRQAVQIPNGLAVQVVYRSQNAEGEMRLGDAWRVK 1170

Query: 1151 PADGLIQALRDQFGRDNVFLQY 1172
            P D L+ ALR +F   ++ + Y
Sbjct: 1171 PTDELLAALRGEFAGSSIEIVY 1192