Pairwise Alignments

Query, 383 a.a., succinyl-diaminopimelate desuccinylase from Pseudomonas simiae WCS417

Subject, 404 a.a., succinyl-diaminopimelate desuccinylase (NCBI) from Rhodospirillum rubrum S1H

 Score =  273 bits (698), Expect = 6e-78
 Identities = 168/392 (42%), Positives = 222/392 (56%), Gaps = 22/392 (5%)

Query: 5   ADLSPTLQLAIDLIRRPSVTPIDADCQKLMMQRLGDAGFALEPMRI-----EDVDNFWAT 59
           A+L+  L LA  L+  PSVTP DA    ++   L   GF    +       E VDN +A 
Sbjct: 11  AELADPLALARALVACPSVTPRDAGALDVLESALIALGFRCVRLPFGAEGGERVDNLYAR 70

Query: 60  HGKHDGPVLCFAGHTDVVPTGPVQAWQNDPFDALIDENGMLCGRGAADMKGSLAAMLVAA 119
            G   GP   FAGHTDVVP G    W   PF A + + G L GRGAADMKG +A  + A 
Sbjct: 71  RGGA-GPCFGFAGHTDVVPAG--DGWSRPPFGAEVVD-GALVGRGAADMKGGIACFVAAV 126

Query: 120 ERFVT--------DYPDHKGSVAFLITSDEEGPAHHGTKAVIERLAARKERLDWCIVGEP 171
            R ++           D  GS+A LIT DEEGPA HGT+ V+E +    ER+D C+VGEP
Sbjct: 127 ARLISGPDSTGSISRHDPTGSIALLITGDEEGPALHGTRKVLEWMEGAGERMDLCLVGEP 186

Query: 172 SSTTLVGDVVKNGRRGSLGATLTVRGIQGHVAYPHLAKNPIHLAAPALAELAAEHWDDGN 231
           ++   +GD++K GRRGSL AT+T+ G  GHVAYPHLA NP+H  +     L AE  DDG 
Sbjct: 187 TNPEGLGDMIKIGRRGSLTATVTLLGRAGHVAYPHLADNPLHRLSTLTGLLLAETLDDGT 246

Query: 232 AFFPPTSFQISNLNSGTGATNVIPGDLKAVFNFRF----STESTVEGLQQRVAEILDKHG 287
           A F P+S Q+++++ G  A NVIP      FN RF    S ES    ++ R     D   
Sbjct: 247 AHFQPSSLQLTSIDVGNPAANVIPAKATLRFNIRFNDRHSGESLSAWIRARCLAACDGDE 306

Query: 288 LDWHVEWALSGLPFLTEPGALLDAVSASIKAITGRETQASTSGGTSDGRFIATLGTQVVE 347
             + +    SG  FLT PG L D ++ + +A+TGR  + STSGGTSD RFI +    V E
Sbjct: 307 SGFSLVLEHSGDAFLTPPGPLSDLIATACQAVTGRRPELSTSGGTSDARFIRS-HCPVAE 365

Query: 348 LGPVNATIHQVNERILASDLDVLTEIYYQTLI 379
            G V  T+H+ +ER+  +DL+ L+EIY + L+
Sbjct: 366 FGLVGRTMHKPDERVAVADLEALSEIYRRVLV 397