Pairwise Alignments

Query, 1021 a.a., multidrug transporter AcrB from Pseudomonas simiae WCS417

Subject, 1040 a.a., efflux RND transporter permease subunit from Ralstonia sp. UNC404CL21Col

 Score =  773 bits (1997), Expect = 0.0
 Identities = 418/1017 (41%), Positives = 632/1017 (62%), Gaps = 6/1017 (0%)

Query: 3    FNLSEWALRNRQIVLFLMILLAVVGTLSYSKLGQSEDPPFTFKAMVIKTNWPGATAQEVS 62
            FNLS  A+R R + LFL+ L++V G +S+ KLG++EDP FT K M I T WPGATAQE+ 
Sbjct: 6    FNLSALAVRERAVTLFLICLISVAGLISFFKLGRAEDPAFTVKVMNIVTVWPGATAQEMQ 65

Query: 63   RQVTERIEKKLMETGEYERIVSFSRPGESQVTFIARDSMHSAQIPELWYQVRKKISDIRQ 122
             QV E+IEK++ E   Y+R  +++RPG +  T    DS   +++ E +YQ RKK+ D   
Sbjct: 66   DQVAEKIEKRMQELRWYDRTETYTRPGLAFTTLTLLDSTPPSEVQEEFYQARKKVGDEVG 125

Query: 123  TLPPDIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVADVGKVELLGL 182
             LP  + GP  NDE+      ++AL   G     L   A+ ++ +L  V  V KV ++G 
Sbjct: 126  NLPSGVIGPIVNDEYSDVTFALFALKAQGEPQRALVRDAETLRQRLLHVPGVKKVNIIGE 185

Query: 183  QDEKIWIELSNLKLATLGLPLAAVQQALQEQNAVSTAGFFETPSERVQLRVSGNFKTVEE 242
            Q E+I++E S+ +LATLG+    V  AL  QNA++ AG  ET   +V +R+ G F  +++
Sbjct: 186  QAERIYVEFSHDRLATLGVNPQDVFAALNTQNALAAAGSVETKGPQVFIRLDGAFDELQK 245

Query: 243  IRNFPIRVGDRTFRIGDVADIHRGFNDPPAPRMRYMGADAIGLAVAMRDGGDILVLGKAL 302
            IR+ P+    RT ++ D+A + RG+ DP    +R  G  A+ L + MR+G + L LGKAL
Sbjct: 246  IRDTPVVSQGRTLKLSDIATVRRGYEDPATFMVRNGGQPALLLGIVMREGWNGLDLGKAL 305

Query: 303  EGEFARLQKNLPAGMELRKVSDQPAAVKTSVGEFVQVLAEALAIVLLVSFFSLGVRTGMV 362
            + E   +  ++P GM L KV+DQ   +  SV EF+     AL +V+LVSF S+G R G+V
Sbjct: 306  DKEVGAINADMPLGMSLTKVTDQAVNIAASVDEFMLKFFAALLVVMLVSFVSMGWRAGLV 365

Query: 363  VALAIPLVLAMTFATMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYDRL 422
            VA A+PL LA+ F  M   G    +I+LG+L+LALGLLVDDAIIA+EMM +KME+GY R+
Sbjct: 366  VAAAVPLTLAVVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYSRV 425

Query: 423  KAASFAWTSTAFPMLTGTLITAAGFLPIATAQSSTGEYTRSIFQVVTIALLASWVAAVVF 482
             A+++AW+ TA PML+GTL+TA GF+P   A+S+ GEYT ++F +V IAL+ASWV AVVF
Sbjct: 426  AASAYAWSHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMFWIVGIALIASWVVAVVF 485

Query: 483  VPYLGEKLLPDLAKIHAAKHGTDGPDPYGTPFYQRVRRMVEWCVRRRKTVIVLTLLLFIG 542
             PYLG K+LP+  ++            Y TP Y R RR++   + R+  V    + LF  
Sbjct: 486  TPYLGVKMLPNFQRVEGGHDAI-----YDTPRYNRFRRLLGRVIARKWLVAGAVVGLFAL 540

Query: 543  SVALFRFVPQQFFPASGRLELMVDLKLAEGASLSNTADQVKRLEALLKEHAGIDNYVAYV 602
            ++     V +QFFP S R E++V++++  G S++ T     +LEA L +        AY+
Sbjct: 541  AIGGMAIVKKQFFPISDRPEVLVEVQMPYGTSINQTDAATAKLEAWLAKQKEAKIVTAYI 600

Query: 603  GTGSPRFYLPLDQQLPAASFAQFVVLAKTIEERESLRTWLIQTLNEQF-PDLRSRVTRLE 661
            G G+PRFYL +  +LP  SFA+ V+   + EER++L+  L Q + +   P  R RVT+L 
Sbjct: 601  GQGAPRFYLAMGPELPDPSFAKIVIRTDSQEERDALKQRLRQAVADGLAPGARVRVTQLV 660

Query: 662  NGPPVGYPVQFRVTGEHIEEVRALARKVAVKVRENPHVANVHLDWEEPSKIVYLNIDQDR 721
             GP   +PV +RVTG   E +R +A  V   +  +P +  V+ DW      ++  + QDR
Sbjct: 661  FGPYSPFPVAYRVTGPDAETLRRIAADVQHVMDASPMMRTVNTDWGTRVPTLHFTLQQDR 720

Query: 722  ARALGVSTANLSKFLQSSLTGSSVSQYREDNELIEILLRGTVHERTELSLLPSLAVPTDN 781
             +A+G++++ +++ LQ  L+G  V+  RED   +++  R   + R + + +    +   N
Sbjct: 721  LQAVGLTSSAVAQQLQFLLSGIPVTAVREDIRTVQVTARSAGNVRLDPARIGDFTLAGAN 780

Query: 782  GKSVALSQIATLEYGFEEGIIWHRNRLPTVTIRADIYGKEQPATLVQQILPTLEGVRAEL 841
            G+ + LSQ+  +E   EE I+  R+R+PT+T+R DI    QP  +   I   L  +  +L
Sbjct: 781  GQRIPLSQVGKIEVRMEEPIMRRRDRMPTITVRGDIADGLQPPDVSTAISKQLAPIIEKL 840

Query: 842  PDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQLRSFSRTAMVFLTAPLGLIG 901
            P GY ++  G++E+S +   ++    P+ + V L +L+ Q+RS     MVFLT+PLGLIG
Sbjct: 841  PSGYRIEQAGSIEESGKATKAMLPLFPIMLAVTLLILIFQVRSIPAMVMVFLTSPLGLIG 900

Query: 902  VTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIKAGLAPWQAIIEATVRRF 961
            V   L++F QPFG  A++G IALSG++MRN++IL+ QI+ +   GL P++A++EATV+R 
Sbjct: 901  VVPTLILFGQPFGINALVGLIALSGILMRNTLILIGQIQHNKDEGLDPFRAVVEATVQRA 960

Query: 962  RPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVKP 1018
            RP++LTALAA+LA IPL+ SVF+G +A  ++GG    T LTL+FLPA+Y+ WF+++P
Sbjct: 961  RPVILTALAAILAFIPLTHSVFWGALAYTLIGGTFAGTILTLVFLPAMYSIWFKIRP 1017