Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  135 bits (340), Expect = 2e-36
 Identities = 110/359 (30%), Positives = 176/359 (49%), Gaps = 30/359 (8%)

Query: 12  VSLVFLLAGCGHEEAAQTTIRPAMVVQPQ-----PSSQSMD-SYPGEVRARYEPDLAFRI 65
           ++   LLAGCG  EA Q +  PA VV+P       S ++ D ++ G VRA    DLAFRI
Sbjct: 20  IASALLLAGCG--EAPQISA-PAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRI 76

Query: 66  GGKVSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTL 125
            G+++   V+EG++VK  Q LA LD +D +  LEA + ++   E        E  R K +
Sbjct: 77  SGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTE-------QEYRRAKAI 129

Query: 126 MDR-QMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEV 184
            ++ Q +S+++ D   N Y     R+++ K + +       Y  + AP DGV++++ +E 
Sbjct: 130 FEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLE-------YTQITAPFDGVISEKTIEN 182

Query: 185 GQVVSAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSP 244
              V A Q +  L    + EV I +P +             EL + P+Q+F  ++R  S 
Sbjct: 183 FAQVQANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYST 242

Query: 245 AADPKSRTFAARVAFTGGK-VPAELGQSARVF----IQVDGDIPLSVPLSALSAEN-GAS 298
                S+T++  + F   K      G SA+V        D +  +++PL+AL  +N G  
Sbjct: 243 QPSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQ 302

Query: 299 YVWRVQPDNTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVRPVDRSN 357
           +VW V   N  ++  V IG   +  V + + L P + VI AGV  + EG  VRP   +N
Sbjct: 303 FVWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYTDNN 361