Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 382 a.a., membrane efflux protein from Sinorhizobium meliloti 1021

 Score =  175 bits (444), Expect = 2e-48
 Identities = 117/328 (35%), Positives = 177/328 (53%), Gaps = 9/328 (2%)

Query: 27  AQTTIRPAMVVQPQPSSQSMDSYPGEVRARYEPDLAFRIGGKVSKRLVEEGERVKANQAL 86
           A   +R A   +P+ + ++   + G + AR + +L FR+ GK+ +RLV+ G++VKA QAL
Sbjct: 51  APPLVRVAEATRPERAERA---FTGTIAARVQSNLGFRVPGKIVERLVDVGQQVKAGQAL 107

Query: 87  AELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVSRSQ-YDNSENLYRA 145
             +D  D+RL L A R  VA A A L    A+  RY TL+   + +  Q Y+ ++     
Sbjct: 108 MRIDETDLRLALTAKRNAVAAARAVLVQAIADERRYATLVKGGVAATPQRYEQAKAALDT 167

Query: 146 GVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVVSAGQTVFTLATDGEREV 205
             A+L   +AE  VA N+  Y+VL A  DG V   + E GQVV+AGQ V  LA  G RE 
Sbjct: 168 AAAQLAAAEAEARVAENETTYSVLVAGADGTVVATLGEPGQVVAAGQAVVQLAHAGLREA 227

Query: 206 LISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAADPKSRTFAARVAFTGGKVP 265
           L++LPE    R  IG      ++    +R   R+R++S AADP++RT+ AR    G    
Sbjct: 228 LVALPET--VRPAIGSEAEASVYGSDGRRGRARMRQISDAADPQTRTYEARYVLDGDAAS 285

Query: 266 AELGQSARVFIQ-VDGDIPLSVPLSALSAENGASYVWRV-QPDNTLKRTPVRIGAFGEKT 323
           A LG +  + I+  +G   ++VP+ A+  +   + VW V Q   T +  P+ I   GE+T
Sbjct: 286 APLGATVTISIRNGEGQSEVAVPVGAVLNDGSRTGVWVVDQASATARFVPIEIKRLGEET 345

Query: 324 VPVLEGLSPTDWVIAAGVHVLHEGQQVR 351
             V  G+   + V+A G H+L +G  VR
Sbjct: 346 ASV-TGIELGEQVVALGAHLLKDGAPVR 372