Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 358 a.a., periplasmic linker protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  121 bits (304), Expect = 3e-32
 Identities = 102/370 (27%), Positives = 175/370 (47%), Gaps = 52/370 (14%)

Query: 10  LPVSLVFLLAGCGHE-EAAQTTIRPAMVVQPQPSSQSMDSYPGEVRARYEPDLAFRIGGK 68
           +P+ L+ LL  C    +   T  R A+   P   +Q    + G  RA+    LAFR+ G+
Sbjct: 7   MPLGLIVLLGSCRQAPDIEHTPARVAVYTIPSTENQVTRVFSGVARAQDLTALAFRVEGR 66

Query: 69  VSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDR 128
           +++  V +G+RVKA   LA L+  D ++ L   RA+       L + R + +R KTL+D+
Sbjct: 67  IARIPVTKGQRVKAGDVLAVLEKNDFQIALNDRRAR-------LDVTRKQAERSKTLVDQ 119

Query: 129 QMVSRSQYD--NSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQ 186
           Q++++++YD  N+E L     AR  ++  E         Y  L+AP DG++    ++  +
Sbjct: 120 QLMAQAEYDQMNAEYLVARAEARQAELMLE---------YTKLKAPFDGLIGDVFLKSFE 170

Query: 187 VVSAGQTVFTLATDGEREVLISLPE--------QGFGRFKIGQPVSVELWSQPDQRFTGR 238
            V  G  V ++      EV + +P+           G+ K G  V+ E +  PD+ F G 
Sbjct: 171 NVQPGTLVLSVHRTERIEVDVQVPDLLIAVSRRAETGQQKQGFDVAFEAF--PDKSFIGH 228

Query: 239 IRELSPAADPKSRTFAARVAF-----------TGGKVPAELGQSARVFIQVDGDIPLSVP 287
           + E++   DP+S T+ A VA               KV  +LG++   + +        +P
Sbjct: 229 LLEVNTEKDPQSHTYVATVAVELPEGVKVLEGMPAKVTVDLGKATYTYRR-----EYLLP 283

Query: 288 LSALSAENGASY------VWRV-QPDNTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAG 340
           +SA+   +G+        VW       T+K  PVR+G    +++ V++GL+    V+  G
Sbjct: 284 ISAVVMRDGSDIDLQDAGVWLYDSATGTVKFKPVRLGVIVGQSIEVVDGLADGQQVVTQG 343

Query: 341 VHVLHEGQQV 350
              L +GQQV
Sbjct: 344 ASRLVDGQQV 353