Pairwise Alignments

Query, 366 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  129 bits (324), Expect = 1e-34
 Identities = 99/357 (27%), Positives = 164/357 (45%), Gaps = 20/357 (5%)

Query: 2   RSTFLPFALPVSLVFLLAGCGHEEAAQTTIRPAMVVQP----QPSSQSMDSYPGEVRARY 57
           +ST   FALPV LV +LA CG EE A+   + A+ V+     Q +  S  S    + A  
Sbjct: 3   KSTIAKFALPVLLVSMLAACGEEEVAKKEEQYAIPVETTTVMQGNVSSFYSTTATLEAPQ 62

Query: 58  EPDLAFRIGGKVSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRA 117
           E ++  RI G +    VEEG+RV+  Q LA +D +  +  L+ + A+V        ++  
Sbjct: 63  EANVVSRIAGLIEAINVEEGDRVQKGQILAVIDAKRQQYDLDRSEAEV-------KIIEQ 115

Query: 118 ERDRYKTLMDRQMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVV 177
           E +R K + +++ +S       E   +A +AR        D+A  Q   + + +P DG+V
Sbjct: 116 ELNRLKKMTNKEFISADSMAKLEYNLQAAIARR-------DLAELQVKESHVVSPIDGIV 168

Query: 178 AKRVVEVGQVVSAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTG 237
           AKR V+ G +      +F +    E   ++ LPEQ     ++GQ   V    Q       
Sbjct: 169 AKRYVKAGNMAQEFGDLFYIVNQDELHGIVHLPEQQLTSLRLGQEAQVFSNQQSKNAIHA 228

Query: 238 RIRELSPAADPKSRTFAARVAFTGGKVPAELGQSARVFIQVD-GDIPLSVPLSALSAENG 296
           ++  +SP  DP+S TF   +A        + G   RV ++ D  +  ++VP SAL  ++ 
Sbjct: 229 KVLRISPVVDPQSGTFKVTLAVPNQNAHLKAGMFTRVELKYDTHENVITVPYSALINQDN 288

Query: 297 ASYVWRVQPDNTLKRTPVRIGAFGEKTVPVLEGLSPTDWVIAAGVHVLHEGQQVRPV 353
              ++ +   N   R  V IG     +V V+ G+ P + V+  G   L +   V  +
Sbjct: 289 KQALYVIDGSNA-NRREVEIGYREGDSVEVVSGIKPGEQVVTRGQQNLKDQSLVEVI 344