Pairwise Alignments

Query, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  314 bits (805), Expect = 7e-90
 Identities = 202/632 (31%), Positives = 335/632 (53%), Gaps = 23/632 (3%)

Query: 5   FSHKILLAASGVVVLAFALFTLYNDYLQRSTIKQNLESSIQQSGELTASSVQNWLSGRIL 64
           FS  + +A +   ++A    T   D  +       +ES  + + +  A  + +W  G+ L
Sbjct: 21  FSVVVAIAVTAAALVAAGYQTFEKDSWRA------IESESRNTLQAHAKGIGDWFLGKQL 74

Query: 65  VLESLTQNVAHQGSGADLPGLVDQPAFTSNFQFTYVGQTNG-VFTQRPDAKMPDGYDPRQ 123
            L+ L + +        +P L  Q   + +F  +Y G   G +F Q P     D YDPR 
Sbjct: 75  ALKGLREEIERNPQLELVPHL-RQTLQSGSFGLSYYGNEQGEMFRQDPSLNTAD-YDPRV 132

Query: 124 RPWYKQAVAADKPMLTPPYMAA-VGGQIVTIAMPVKKNGELLGVVGGDLSLQTLVKIINS 182
           R WYK+A AA KP+ T PY++  +   +VT+A PV+  G+L+GV   +L+L  L+K + +
Sbjct: 133 RGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVAASNLALDKLIKDVLA 192

Query: 183 VDFGGIGHAFLVSSDGQVIVSPEQDQVMKNLKDIYPGTQVRIEKVSQ--------DVVLN 234
           ++  G G+A LV+  G+++  P QD ++K  +++    Q+ I K++          + ++
Sbjct: 193 IEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEM--SAQLTISKLNIAAKDHSLFQLSMD 250

Query: 235 GQDRILSFTPISGLPGADWYIGLSIDKDKAYAPLGKFRTSALIAMLIAVVAIAVLLSLLI 294
           G+D++L    ++     DW + + +DK     PL       +   L  ++ +A+L S  +
Sbjct: 251 GRDKVLMAEEVAN---TDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILLVMALLTSWFV 307

Query: 295 QVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQFVERIHASISEVSSA 354
              L  L  +  A+ DIA+G+GDLTRRL V S+DE G +   FN+FV+R+H  +  V   
Sbjct: 308 ARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVKNVREV 367

Query: 355 TRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEIARNAADASQHASGA 414
           +  +   +    AS+  +      Q      VA A+ E+ +AT EIA NA + +++A+ +
Sbjct: 368 SVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNATQS 427

Query: 415 SEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGISQQTNLLA 474
            +  +DG   ++Q+  ++ +L+Q+++ +   I  L    + I  IL  I+GI++QTNLLA
Sbjct: 428 VQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNLLA 487

Query: 475 LNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAVTTMNASQ 534
           LNAAIEAARAGE GRGFAVVADEVR L+ RT  S EEI   I  LQ  +  AV+ M  S 
Sbjct: 488 LNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTESH 547

Query: 535 TSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDINQINLLNQ 594
              E SV   NQ G  L ++++ I +I  M   +A+A EEQ+ V   +NV+   +  ++ 
Sbjct: 548 KLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREVSD 607

Query: 595 QGVANLNETLKDCDALSQQANRLKQLVDSFKI 626
           Q      ++++   +L   A  L + +  FK+
Sbjct: 608 QLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639