Pairwise Alignments

Query, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  335 bits (859), Expect = 3e-96
 Identities = 204/629 (32%), Positives = 336/629 (53%), Gaps = 10/629 (1%)

Query: 3   LKFSHKILLAASGVVVLAFALFTLYNDYLQRSTIKQNLESSIQQSGELTASSVQNWLSGR 62
           +KFSHKI+ A+S +++   AL +    +  R  I+  +  S+ +  +  + +    ++GR
Sbjct: 1   MKFSHKIVAASSVLLLATVALLSGSQYFKVRDEIRSMVSDSVDEIVDGVSKTTAEVINGR 60

Query: 63  ILVLESLTQNVAHQGSGADLPGLVDQPAFTSNFQFTYVGQTNGVFTQRPDAKMPDG--YD 120
             + +  T  + +     ++  ++ QP   + F     G          D     G  +D
Sbjct: 61  KSIAQYATSLIENNPEPDNVRTIISQPLIKNTFLLVGFGLEKDGSNINNDPSWNPGPTWD 120

Query: 121 PRQRPWYKQAVAADKPMLTPPYMAAVGGQI-VTIAMPVKKN--GELLGVVGGDLSLQTLV 177
           PR RPWYK A  A K ++T PY  +  G+I V++A PVK +  G+ LG +  D+SL  L 
Sbjct: 121 PRVRPWYKDAKNAGKLVITAPYADSASGEILVSVATPVKDSATGQFLGSIFYDVSLAELA 180

Query: 178 KIINSVDFGGIGHAFLVSSDGQVIVSPEQDQVMKNLKDIYPGTQVRIEKVSQDVVLNGQD 237
           +++N V     G+ F+VS DG  I  P+++   K + +    +++ ++  +  V++NG+ 
Sbjct: 181 ELVNEVKLFDAGYVFIVSEDGTTIAHPKKEFNGKPMSEFLGESKINVD--THQVIINGKP 238

Query: 238 RILSFTPISGLPGADWYIGLSIDKDKAYAPLGKFRTSALIAMLIAVVAIAVLLSLLIQVL 297
             +SF+ + G    DWY+G+ ID++ AYA L + R S LI  +IA+V    +L  +++VL
Sbjct: 239 YAVSFSDVEG---EDWYVGVVIDEEIAYAALDELRRSTLIFTVIALVISVFVLLFIVRVL 295

Query: 298 LRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQFVERIHASISEVSSATRQ 357
           ++PL T+  A+Q++A GEGDLT+RL   + +EF ++   FN F E +   + +  +   +
Sbjct: 296 MKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAIGFNTFTETLQKQLIQSKAIGAE 355

Query: 358 VHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEIARNAADASQHASGASEQ 417
           +   S+    +   S      Q      +A A++E+   + ++A NA  A+  A  A + 
Sbjct: 356 ILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDA 415

Query: 418 ADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGISQQTNLLALNA 477
           A  G  VV +T  A+  LS  I  +   ++ L ++T NI  +L VI  I+ QTNLLALNA
Sbjct: 416 AAAGTDVVTKTTKAIDTLSATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNA 475

Query: 478 AIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAVTTMNASQTSS 537
           AIEAARAGE+GRGFAVVADEVR LA RTQ+S  EI  MI  LQ G+      M+ S+ ++
Sbjct: 476 AIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTA 535

Query: 538 EESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDINQINLLNQQGV 597
             +V  A  A E L  +   I +I  MN  +A+A EEQ+ V E +N +  +I  L+ Q  
Sbjct: 536 ASAVNQAQGANEALEKIRLAIQQISDMNIQIASAAEEQSLVAEEINNNTVKIKDLSDQVA 595

Query: 598 ANLNETLKDCDALSQQANRLKQLVDSFKI 626
            + +E        ++       +++ FK+
Sbjct: 596 ESADEANMSMQIQTENIREQDAILNKFKV 624