Pairwise Alignments

Query, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  317 bits (813), Expect = 8e-91
 Identities = 199/630 (31%), Positives = 331/630 (52%), Gaps = 17/630 (2%)

Query: 3   LKFSHKILLAASGVVVLAFALFTLYNDYLQRSTIKQNLESSIQQSGELTASSVQNWLSGR 62
           ++FS KI+ A+S +++   AL +    + Q ST+++ +ES +Q S       V+N +   
Sbjct: 1   MRFSQKIVAASSALLLCVIALLS----FQQLSTVREEIESLVQDSLMEMVKGVKNTIESD 56

Query: 63  ILVLESLTQNVAH-----QGSGADLPGLVDQPAFTSNFQFTYVG-QTNGVFTQRPDAKMP 116
           +   + L Q+          + A    +++ P    +F    +G +++    +  D   P
Sbjct: 57  LASKKGLAQSTTEILQLDPTNKAFAKSVLESPNLKGSFLAIGLGYESDATVVENDDGWEP 116

Query: 117 DG-YDPRQRPWYKQAVAADKPMLTPPYM-AAVGGQIVTIAMPVKKNGELLGVVGGDLSLQ 174
           +  YDPR+RPWY  A    K ++T PY+  +    I++I  PV +    +G +  D+ L 
Sbjct: 117 NADYDPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYDVELT 176

Query: 175 TLVKIINSVDFGGIGHAFLVSSDGQVIVSPEQDQVMKNLKDIYPGTQVRIEKVSQDVVLN 234
            L +++NSV+    G+ F+ + DG  I  P  +   +      P   V +++ +Q + L+
Sbjct: 177 QLAQLVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPN--VDLKEGTQRIELD 234

Query: 235 GQDRILSFTPISGLPGADWYIGLSIDKDKAYAPLGKFRTSALIAMLIAVVAIAVLLSLLI 294
           G+  ++ F  +   P   WYIG  +D+  A+A +   R S+LI  +I V+   + LS LI
Sbjct: 235 GKYYLVKFAQV---PSESWYIGAVVDESIAFAMVDDLRHSSLIYTVIGVLLSIIGLSFLI 291

Query: 295 QVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQFVERIHASISEVSSA 354
           +VL++PL  +  A++D+A G+GDLT+RL   +  EF  +   FN F E +   I  +   
Sbjct: 292 KVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGI 351

Query: 355 TRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEIARNAADASQHASGA 414
             ++   +++ +  ++ S     +Q      +A A++E+     E+A NA  A+  A  A
Sbjct: 352 GAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEA 411

Query: 415 SEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGISQQTNLLA 474
            E + DG KVV  T  ++  LS +I  +  +++ L  +T NI  IL VI  I+ QTNLLA
Sbjct: 412 DEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQTNLLA 471

Query: 475 LNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAVTTMNASQ 534
           LNAAIEAARAGE+GRGFAVVADEVR LA RTQ+S  EI  MI  LQ G+      MN S+
Sbjct: 472 LNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESK 531

Query: 535 TSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDINQINLLNQ 594
            +++++V+ A  A E L  +   I  I  MN  +A+A EEQ+ V E +N +  +I  L+ 
Sbjct: 532 YTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLST 591

Query: 595 QGVANLNETLKDCDALSQQANRLKQLVDSF 624
           Q   +        +  ++      +L+++F
Sbjct: 592 QVADSAKSASMAMEVQTENVREQGKLLNTF 621



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 33/185 (17%)

Query: 456 IGHILDVIKGISQQTNLL-----ALNAAIEAARAGEAG----------RGFAVVADEVRN 500
           IG +L +I G+S    +L     AL+ AIE   +G+              FA++A +   
Sbjct: 278 IGVLLSII-GLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNV 336

Query: 501 LAHRTQESAEEIHKMITSLQVGSREAVTTMNASQTSSEESVEVANQAGERLVSVTQRIVE 560
                Q+  + +  +   +  G+ + V   + S ++  + ++   Q    +  +     E
Sbjct: 337 FCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATE 396

Query: 561 IDGMNQSVAAATEEQTAVVETLNVDINQINLLNQQGVANLNETLKDCDALSQQANRLKQL 620
           +    Q  AAA  E                  +Q G   +++T +  DALS    R++Q 
Sbjct: 397 VANNAQGAAAAAHEADEA--------------SQDGSKVVSDTTRSIDALSA---RIEQA 439

Query: 621 VDSFK 625
           V+  K
Sbjct: 440 VEEVK 444