Pairwise Alignments

Query, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  254 bits (649), Expect = 8e-72
 Identities = 163/523 (31%), Positives = 291/523 (55%), Gaps = 22/523 (4%)

Query: 115 MPDGYDPRQRPWYKQAVAADKPMLTPPYMA-AVGGQIVTIAMPVKKNGELLGVVGGDLSL 173
           +P  YDPR RPWY+Q  A  +  +T  Y+    G ++++I   +K  G+  GVV GD+ L
Sbjct: 120 IPGKYDPRTRPWYQQGKATTQLDVTDIYIDDGSGHKVISI---LKNLGD--GVVLGDIEL 174

Query: 174 QTLVKIINSVDFGGIGHAFLVSSDGQVIVSPEQDQVMKNLKDIY--PGTQVRI---EKVS 228
             L  +++++D+ G   A +    G+V+ S     V  +    +  P  Q +I   ++V 
Sbjct: 175 TYLHDVVSAIDYPG-AVALITDQTGKVLASESPTLVSGSRFSDFGLPQVQQKIIGSDEVM 233

Query: 229 QDVVLNGQDRILSFTPISGLPGADWYIGLSIDKDKAYAPLGKFRTSALIAMLIAVV-AIA 287
           Q+  ++G D++     I  + G  W++ + +DK  AYA + +  TSAL++  I ++ AI+
Sbjct: 234 QEYRIDGVDKLGFSKAIPLVNGKQWFLFIGLDKSNAYAVVDQALTSALVSSAIMLLCAIS 293

Query: 288 VLLSLLIQVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQFVERIHAS 347
           +LL +L  +L RP+ ++   + ++++G GDLT+RL +  +D+ G++    NQF+  + A 
Sbjct: 294 ILLGVLY-LLYRPILSLKAMVTELSKGNGDLTKRLEIHCEDDLGQISMGINQFIANLQAM 352

Query: 348 ISEVSSATRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEIARNAADA 407
           + EV  A+  +    +R+   +  +       +  T  + AA+ E+ A   ++A+N ++ 
Sbjct: 353 MREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEEMSATANDVAQNGSET 412

Query: 408 SQHASGASEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGIS 467
           +      +EQA   ++VV Q    ++ L +++  +  +I  ++  T NI  +L VI  I+
Sbjct: 413 ASFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQIDRDTINITQVLKVIGDIA 472

Query: 468 QQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAV 527
            QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ+S  EI + +++L+  S  A+
Sbjct: 473 DQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEETLSNLRDASNSAI 532

Query: 528 TTMNASQTSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDIN 587
            +M  ++ +  E+     +    L ++   + +I+ +N  +A A EEQ++V   +  +++
Sbjct: 533 HSMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATAAEEQSSVSAEITRNMS 592

Query: 588 QI----NLLNQQGVANLNETLKDCDALSQQANRLKQLVDSFKI 626
            I    N L + G ++ NET+     L+    +L+Q+V  FK+
Sbjct: 593 AICDMANELARSGESSRNETVN----LATANQQLEQIVGQFKL 631