Pairwise Alignments

Query, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  280 bits (717), Expect = 1e-79
 Identities = 175/472 (37%), Positives = 262/472 (55%), Gaps = 17/472 (3%)

Query: 165 GVVGGDLSLQTLVKIINSVDFGGIGHAFLVSSDGQVIVSPEQDQVMK-NLKDIYPGTQVR 223
           G+VG   SL  +V+++ S      G  +LV + G V +  +  Q+ K +L  +Y G   R
Sbjct: 174 GLVGLAKSLDDMVRLLKSFKIEDTGFVYLVDAKGDVKLHSDTSQIGKASLSSLYGGNVTR 233

Query: 224 IEKVSQDVVLNGQDRILSFTPISG---------LPGADWYIGLSIDKDKAYAPLGKFRTS 274
                   +LN  D  L+ T + G         +P  DWY+   + + + +A L +    
Sbjct: 234 -------ELLNKGDFGLTQTELDGETLLVASSYIPSMDWYLVAQVPRAEVFALLEESAYQ 286

Query: 275 ALIAMLIAVVAIAVLLSLLIQVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVG 334
            L+  ++   A   L + +   + +P+  +   +QDI QGEGDL +RL V   DE  ++ 
Sbjct: 287 ILVWTVLIAAAFIGLSTFVSASVSQPIAKVADMLQDIGQGEGDLRQRLPVEGNDELAQLA 346

Query: 335 SAFNQFVERIHASISEVSSATRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELG 394
             FN F+E+I  SI EV+  + Q+   ++ V   +  +   S  Q  +T  V  AINE+G
Sbjct: 347 KGFNSFIEKIQHSIIEVTDTSVQLSHAAKDVANQAQQTQDDSQLQKDQTMMVVTAINEMG 406

Query: 395 AATQEIARNAADASQHASGASEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTD 454
           A   EIA NAA A+ +A  A   + +G+ VV +    +++LSQ +      IE+L   T 
Sbjct: 407 ATVHEIAGNAAQAADNAKDADNASSNGQIVVTRARDTINQLSQDVEQVGNVIESLATHTT 466

Query: 455 NIGHILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHK 514
           +IG ILDVI+ +S QTNLLALNAAIEAARAGEAGRGFAVVA+EVRNLA RT  S +E+ K
Sbjct: 467 SIGSILDVIRAVSDQTNLLALNAAIEAARAGEAGRGFAVVAEEVRNLASRTAASTDEVQK 526

Query: 515 MITSLQVGSREAVTTMNASQTSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEE 574
           MI +LQ  +  AV  M  S++ S+E V+  ++A   L  ++Q+I  I  MN  VAAATEE
Sbjct: 527 MIDNLQSEAARAVEAMTQSKSRSQEGVQAVDEASHTLTEISQQIGAITDMNIQVAAATEE 586

Query: 575 QTAVVETLNVDINQINLLNQQGVANLNETLKDCDALSQQANRLKQLVDSFKI 626
           Q+ VVE +N ++ +I+ + Q+         +   +L+Q A+RL  LV  FK+
Sbjct: 587 QSTVVEDINRNVTEISEITQRTSETSQAVAQASQSLNQLAHRLDTLVAGFKV 638