Pairwise Alignments

Query, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 623 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  314 bits (805), Expect = 6e-90
 Identities = 212/631 (33%), Positives = 332/631 (52%), Gaps = 32/631 (5%)

Query: 8   KILLAASGVVVLAFALFTLYNDYLQRSTIKQNLESSIQQSGELTASSVQNWLSGRILVLE 67
           KIL++    + L  +L +  +   Q+S + QN    +Q+ GE  A  +Q WL+GR  ++ 
Sbjct: 9   KILISVVIALSLVISLLSWQSYSSQKSLLLQNSLEQVQRLGEQQAERIQEWLAGRQDIVG 68

Query: 68  SLTQNVAHQGSGADLPGLVDQPAFTSNFQFTYVGQTNGVFTQRPDAKMPDGYDPRQRPWY 127
           +L   V      A     + Q   +  FQ TY G   G       +    GYDPR RPWY
Sbjct: 69  ALASKVEDNSLSA-----LQQAQASGRFQLTYYGTETGQMLDSDPSIDRTGYDPRTRPWY 123

Query: 128 KQAVAADKPMLTPPYM-AAVGGQIVTIAMPVKKNGELLGVVGGDLSLQTLVKIINSVDFG 186
           KQA+     +LT PY+  A    +VT+A    +     GVVGGDLS+ +LV+ +N +   
Sbjct: 124 KQAMNERGLILTKPYVDVAYNVLVVTMAQATSQ-----GVVGGDLSIASLVESVNRMTLP 178

Query: 187 GIGHAFLVSSDGQVIVSPEQDQVMKNLKDIYPGTQVRIEKVSQDVVL--------NGQDR 238
             G+A ++  DG VI   +  + MK +  I       + + S+             G+D+
Sbjct: 179 ANGYAIMMHKDGTVIAYKDASKAMKPVGQIDNDLNHDLPQQSRQAGTLLPMYFENEGRDK 238

Query: 239 ILSFTPISGLPGADWYIGLSIDKDKAYAPLG-----KFRTSALIAMLIAVVAIAVLLSLL 293
           ++    I   P  DW + + +DK+   APL      +F  SA++ +L++V+AI    S L
Sbjct: 239 LVWGVDI---PNTDWELVIVLDKETLEAPLTDLLLTQFGLSAVV-LLLSVLAI----SWL 290

Query: 294 IQVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQFVERIHASISEVSS 353
           + +LL PL  +  A+  IA G GDLT+R+ V ++DE G +  +FN+FV   H  IS +  
Sbjct: 291 VNLLLGPLGRVSQALARIADGNGDLTQRIEVDTQDEVGVLADSFNRFVGSQHQLISHIRQ 350

Query: 354 ATRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEIARNAADASQHASG 413
              ++   ++R + +++ ++     Q      VA A+ E+ +AT EIA NA + +  A  
Sbjct: 351 LASELDADAERSLKTNHIAVAELQRQQQEVAMVATAVTEMASATNEIAANAENTATAAQQ 410

Query: 414 ASEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGISQQTNLL 473
           ++  +  G+++V +T  +++ L+ +++ +   IE L+    +I  IL  I+GI++QTNLL
Sbjct: 411 SAASSFQGKELVNKTRSSINSLADEVAQATDVIEDLSRHAQSISSILATIQGIAEQTNLL 470

Query: 474 ALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAVTTMNAS 533
           ALNAAIEAARAGE GRGFAVVADEVR L+ RTQ+S +E+H  I +LQ  + +AV+ M +S
Sbjct: 471 ALNAAIEAARAGEQGRGFAVVADEVRVLSRRTQDSTQEVHATIETLQRTTAKAVSLMESS 530

Query: 534 QTSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDINQINLLN 593
           Q  +  SVE AN A + L  +TQ +  I  M   +A A EEQT V   +  +   I  + 
Sbjct: 531 QMLAGNSVEDANAAAKALEEITQAVNVISDMAGQIATAAEEQTQVTGEITQNTVAIKDVT 590

Query: 594 QQGVANLNETLKDCDALSQQANRLKQLVDSF 624
            +        L    AL  +AN L   V +F
Sbjct: 591 DEITEAAKSDLTQAQALKARANDLNAQVATF 621