Pairwise Alignments

Query, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  299 bits (766), Expect = 2e-85
 Identities = 218/647 (33%), Positives = 329/647 (50%), Gaps = 35/647 (5%)

Query: 2   NLKFSHKILLAASGVVVLAFALFTLYNDYLQRSTIKQNLESS--------IQQSGELTAS 53
           NL    KILL  +  V+L+  L  + +    +S ++Q +  S        I+   EL  S
Sbjct: 5   NLTIKQKILLTVTFAVLLSTILVGVLSQRSAKSVVQQRMLGSEMPSLMMQIRNKIELDIS 64

Query: 54  SVQN---WLSGRILVLESLTQNVAHQGSGADLPGLVDQPAFTSNFQFTYVG-QTNGVFTQ 109
           S+ N    L+   ++L+ L      +     +  L D        Q +Y   QT   +TQ
Sbjct: 65  SLMNAAEQLASSRMLLQWLENGRPQEQEPQVVAQLKDITRQYHLAQASYADRQTAAYYTQ 124

Query: 110 RPDAKMPDGY----DPRQRPWYKQAVAADKPMLTPPYMAAVGGQIVTIAMPVKKNGELLG 165
                  DG+     P Q  W+     + +  +   +  A  G++       + NG   G
Sbjct: 125 -------DGFLRVLTPAQDGWFFGYRDSGQERMLNVFTEA-NGEVKLFINYQQPNGR--G 174

Query: 166 VVGGDLSLQTLVKIINSVDFGGIGHAFLVSSDGQVIVSPEQDQVMKN-LKDIYPGTQV-- 222
           +VG   SL  +V+++ S      G  +LV + G+V + P+  Q+ K+ LK +Y G  +  
Sbjct: 175 LVGLAKSLDDMVRLLGSFKIEETGFVYLVDAKGEVKLHPDASQIGKSSLKSLYSGANISS 234

Query: 223 ---RIEKVSQDVVLNGQDRILSFTPISGLPGADWYIGLSIDKDKAYAPLGKFRTSALIAM 279
              R +    D  + G++   +F   S +P  DWY+   + + + +A L       LI  
Sbjct: 235 LLNRSDFNLIDTQIQGEN---TFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWT 291

Query: 280 LIAVVAIAVLLSLLIQVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQ 339
           LI      +L  ++   + RP+  +    +DI +GEGDL +RL V  +DE  ++   FN 
Sbjct: 292 LIIAAGFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVKGEDEIAQLAQGFNS 351

Query: 340 FVERIHASISEVSSATRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQE 399
           F+ +I  S+ EV+  + Q+   ++ V   +  ++  S EQ  RT  V  AINE+GA   E
Sbjct: 352 FISKIQDSVIEVAQTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNE 411

Query: 400 IARNAADASQHASGASEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGHI 459
           IA NAA A+  A  A  +++ G+ VV +    +++LSQ +      IE+L   T +IG I
Sbjct: 412 IASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGI 471

Query: 460 LDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSL 519
           LDVI+ IS+QTNLLALNAAIEAARAGEAGRGFAVVADEVRNLA RT  S  E+  MI  L
Sbjct: 472 LDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKL 531

Query: 520 QVGSREAVTTMNASQTSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVV 579
           Q  +  AV  M  S+  S E V   ++A + LV ++ RI  I  MN  VAAATEEQ+ VV
Sbjct: 532 QSEASRAVNAMAQSRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVV 591

Query: 580 ETLNVDINQINLLNQQGVANLNETLKDCDALSQQANRLKQLVDSFKI 626
           E +N ++ +IN + Q+  +      +   AL+Q A+RL  LV  FK+
Sbjct: 592 EDINRNVTEINEITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 638