Pairwise Alignments

Query, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  176 bits (445), Expect = 3e-48
 Identities = 133/541 (24%), Positives = 252/541 (46%), Gaps = 4/541 (0%)

Query: 2   KNWTLRQRILASFAVIIAIMLLMVVVSYSRLLKIEASQEAVRDDAVPGVYLSSMIRSAWV 61
           KN  + ++I  +F VI  I L      Y+ L  I++    + DD +P + L + I+    
Sbjct: 5   KNLAIGKKIAVAFGVIALINLAFGGYLYNSLHTIKSDVLNLTDDTLPSMMLVNGIKYNMS 64

Query: 62  DSYLETIDIIGLRDEKDLTNSDKSDYKSFEARIAQQMATYEKTIHGQADRMEFDNFKAAH 121
                 I ++   DE ++    +     ++ +IAQ ++ YE++I    +R  F   K   
Sbjct: 65  SVRRAQISLLSSTDEAEIAEDIRWMNDHYQ-QIAQDLSRYERSIWTDHERSIFMPVKNLW 123

Query: 122 ITYNKVLAQLLERVDAGDLPGARTLLEEQLTPIWVEGRMKLNDIITENKNVSDRATAAID 181
             Y + L      +   ++  A+  L+  L P + +    +++++  N +  D   + + 
Sbjct: 124 NEYLRQLGSFNNDILQKEMIKAQQDLQRSL-PTFEKLETAIDELLKLNLSYVDNNRSELT 182

Query: 182 ESVLSAKVSMAVSLVIAVLAAGLCGLLLMRAIMAPMQRIVDILETMRDGDLSKRLSLER- 240
           E + +       S+V  +        LL   I +P+ ++V     + +G+L+ RL  +  
Sbjct: 183 ELIDNISEFSVASIVALLAFMSAVTWLLTNLICSPLMQVVTQANAIAEGNLAHRLDRKTI 242

Query: 241 -KDEFGAVETGFNDMMTELTALVSQAQRSSVQVTTSVTEIAATSKQQQATATETAATTTE 299
             DE G +    + M   L  +V +   S+ Q+  +V E++A S+Q             +
Sbjct: 243 GHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVMQ 302

Query: 300 IGATSREIAATSKDLVRTMTEVSTAADQASVAAGSGQQGLARMEETMHSVMGAADLVNAK 359
           I     E+ +T  ++ R     S A+  +S  A  G Q +  + +++  V         +
Sbjct: 303 IATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTEQR 362

Query: 360 LAILNEKAGNINQVVVTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQT 419
           +  L  +A  IN VV  I  +A+QTNLL+LNAAIEA +AGE GRGFAVVA EVR LA +T
Sbjct: 363 VLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAGKT 422

Query: 420 AVATYDIEQMVREIQSAVSAGVMGMDKFSEEVRRGMFEVQQVGEQLSQIIHQVQALAPRV 479
             +T DI ++++ +Q+         +   E +   + + Q+  + + QI HQ   +A   
Sbjct: 423 QQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQETQQAIEQIRHQSSQIADMT 482

Query: 480 LMVNEGMQAQATGAEQINHALVQLGDASSQTVESLRQASFAIDELSQVAVGLRSGVSRFK 539
           + +      Q + +E+++  + ++ +++ Q  +    A+ +  ELSQ+A  L+  V RF+
Sbjct: 483 IQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSAAQSCAELSQLASQLQDTVQRFR 542

Query: 540 V 540
           +
Sbjct: 543 L 543