Pairwise Alignments

Query, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  182 bits (463), Expect = 3e-50
 Identities = 120/406 (29%), Positives = 208/406 (51%), Gaps = 15/406 (3%)

Query: 139 DLPGARTLLEEQLTPIWVEGRMKLNDIITENKNVSDRATAAIDESVLSAKVSMAVSLVIA 198
           D   A     +++T + V      ND+IT      D  +A   + +++A    A+++V+ 
Sbjct: 244 DAQAASKAALDKMTTLGVSMLATSNDLITRQNKSRDADSAKSVQMIIAAT---ALAMVLG 300

Query: 199 VLAAGLCGLLLMRAIMAPMQRIVDILETMRDGDLSKRLSLERKDEFGAVETGFNDMMTEL 258
           +LAA +    + R I  P+Q  ++++E +  GDLS+ L+++RKDE G ++     M   L
Sbjct: 301 ILAAWV----ITRQITTPLQETLEVVERVASGDLSRNLNVDRKDELGKLQATIQRMTVSL 356

Query: 259 TALVSQAQRSSVQVTTSVTEIAATSKQQQATATETAATTTEIGATSREIAATSKDLVRTM 318
             LV   +    Q+ ++  E++A ++Q  A        T ++     E+ AT +++ R  
Sbjct: 357 RELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMTATVQEVARNA 416

Query: 319 TEVSTAADQASVAAGSGQ----QGLARMEETMHSVMGAADLVNAKLAILNEKAGNINQVV 374
            E S AA  A   A  G+    + +A++E    +V  +++ + A    L +++  I  V+
Sbjct: 417 EEASEAAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMGA----LKQESDKIGSVL 472

Query: 375 VTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQTAVATYDIEQMVREIQ 434
             I  VA+QTNLL+LNAAIEA +AGE GRGFAVVA EVR LA +T  +T +IE ++  +Q
Sbjct: 473 DVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEIEALIARLQ 532

Query: 435 SAVSAGVMGMDKFSEEVRRGMFEVQQVGEQLSQIIHQVQALAPRVLMVNEGMQAQATGAE 494
           S        MD   E     +   ++ G  L+ I   V ++      +    + Q+  AE
Sbjct: 533 SGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQIAAAAEEQSATAE 592

Query: 495 QINHALVQLGDASSQTVESLRQASFAIDELSQVAVGLRSGVSRFKV 540
           +IN +++ + D S QT  +  + + +  EL+++   L+  VSRF V
Sbjct: 593 EINRSIINVRDVSEQTSAASEETAASSVELARLGNHLQVLVSRFTV 638