Pairwise Alignments

Query, 383 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 345 a.a., polyamine ABC transporter, periplasmic polyamine-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 87.4 bits (215), Expect = 5e-22
 Identities = 75/288 (26%), Positives = 121/288 (42%), Gaps = 29/288 (10%)

Query: 30  AVGAGEGQLDIVAWPGYIERGESDKAYDWVTGFEKETGCKVNVKTAATSDEM---VSLMA 86
           AV A    L++  W  Y+ +   D+       F KETG KV   T  +++ M   + L+ 
Sbjct: 18  AVSAEPKVLNVFNWSEYVPQTVLDR-------FTKETGIKVVYTTYESNEAMYAKIKLLR 70

Query: 87  KGGYDLVTASGDASLRLIVGKRVQPINTALIPNWKNIDPRLKDAPWYVVGQQTYGTPYQW 146
             GYD+V  S      +     +  I+ A + N+ N+DPR+   P+    Q  +  PY W
Sbjct: 71  GKGYDIVVPSTYFIDMMRKDGLLAKIDRAKLTNYANLDPRVLHQPFDP--QNEFSVPYMW 128

Query: 147 GPNVLMYNTNVFKTAP-TSWNVIFDPQNLPDGKPNKGRVQAYDGPIYIADAALYLKSTKP 205
           G   LM N  V   A  +SWN +F P+              + G + ++D          
Sbjct: 129 GNTGLMVNRKVVDPATISSWNDLFRPE--------------FKGGVILSDDLRDTFGIAL 174

Query: 206 ELGIQNPYELTETQYKAVLELLRAQQPLIHRYWHDTTVQMSDFKNEGVVASSAWPYQVNG 265
           +    +    +E + KA  E L   +P +  +  D T     F  E V    +W      
Sbjct: 175 KALGYSVNSTSEAEIKAAYEWLLKLKPSVRVF--DVTATKQAFIAEEVKGGMSWNGDAFI 232

Query: 266 LQNEKQPIASTIPKEGATGWADTTMLHTEAKHPNCAYKWMDWSLQPKV 313
             NE   +A   PKEG   W D+  +   A+H + A+K++D+ L+P +
Sbjct: 233 AMNENPDLAFVYPKEGLPLWVDSLAIPIGAEHKDNAHKFIDFLLRPDI 280