Pairwise Alignments

Query, 309 a.a., spermidine/putrescine ABC transporter permease from Pseudomonas simiae WCS417

Subject, 301 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Shewanella loihica PV-4

 Score =  129 bits (324), Expect = 9e-35
 Identities = 73/258 (28%), Positives = 144/258 (55%), Gaps = 20/258 (7%)

Query: 49  WQGFYTFDDFTMAVTPDLTLANFAALFQPSNF-DIIVRTLSMAIAVSIASAIVAFPIAYY 107
           ++  Y + D ++ +   L L N+  +F+   + +  + +L MA   +I   ++ +P+AY 
Sbjct: 50  YEALYQYADESLQIM--LNLGNYILIFEDHLYINAYLGSLKMACVTTIGCLLIGYPMAYA 107

Query: 108 MARYTTGKTKAFFYIAVMMPMWASYIVKAYAWTLLLAKGGVAQWFVQHLGL--EPVLQFV 165
           +AR    + +    + VM+P W S++++ YAW  +L+  GV    +  LG+  EP+    
Sbjct: 108 IAR-APKQHQTVLILLVMLPSWTSFLIRVYAWMGILSNNGVINNLLMWLGVISEPI---- 162

Query: 166 LGIPGVGGSTLSTSHLGRFMVFVYIWLPFMILPIQASLERLPPSLLQASADLGAKPRQTF 225
                     +  ++   ++  +Y +LPFMILP+ A+L +L  SLL+A+ADLG++   TF
Sbjct: 163 ---------QMLNTNFAVYIGIIYTYLPFMILPLYANLSQLDGSLLEAAADLGSRSLNTF 213

Query: 226 MQVILPLSIPGIAAGSIFTFSLTLGDFIVPQLV-GPPGYFVGGMVYAQQGAIGNMPMAAA 284
            +V LPLS  G+ AGS+  F   +G+F++P+L+ GP    +G +++ +     + P+A++
Sbjct: 214 WKVTLPLSKGGVIAGSMLVFIPVVGEFVIPELLGGPDSLMIGKVLWQEFFNNRDWPVASS 273

Query: 285 FTLVPIVLIAVYLSIVKR 302
             +V + L+ + +++  R
Sbjct: 274 LAIVMLALLIIPITLFHR 291