Pairwise Alignments

Query, 236 a.a., RNA-binding protein S4 from Pseudomonas simiae WCS417

Subject, 241 a.a., 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases from Pseudomonas stutzeri RCH2

 Score =  221 bits (564), Expect = 8e-63
 Identities = 115/241 (47%), Positives = 158/241 (65%), Gaps = 5/241 (2%)

Query: 1   MTDPIRLSKRLIELVGCSRREAELFIEGGWVSVDGEVIDEPQFKVTTQ-KVALDPDAKAT 59
           MTDP+RL+KRL E +GCSRREAEL+IEGGWV+VDGE+++ P  KV+ Q ++ L   A A 
Sbjct: 1   MTDPVRLAKRLAEQLGCSRREAELYIEGGWVTVDGELVEAPFLKVSPQQRIELRDGATAR 60

Query: 60  VPEPVTILLHAPAGVDAETAMASISAETLSEEHRFGK----RPLKGHFLRLTASADLQAK 115
              PVT+LLH PAG+  +    S+    ++ EH         PL+ H L+      L  +
Sbjct: 61  EIAPVTLLLHKPAGLAIDVDADSVRRVLVASEHWSDDPSRIEPLQRHLLQQNILLPLDPE 120

Query: 116 ASGLLVFTQDWKILRKLTADAAKIEQEYVVEVEGDMVAHGLNRLNHGLTYKGKELPAVKA 175
           ASGL VF+Q  +++R LT+   K+EQEYVVEV G+   +G   L  G+ ++GK LP  K 
Sbjct: 121 ASGLTVFSQQREVIRLLTSTRDKLEQEYVVEVSGEAEENGFALLAKGIGHRGKILPKAKV 180

Query: 176 SWQNENRLRFAMKNPQPGVIALFCEAVGLKVIAIRRIRIGGVSIGKVPVGQWRYLSGKEK 235
           SWQ+ENRLR  +K P PG + L CEA+GL+V+A +RIRIG +S+ K+PVG WR +   E+
Sbjct: 181 SWQSENRLRLVIKEPAPGEVRLLCEAIGLRVLACKRIRIGRLSMAKLPVGHWRIVGEHER 240

Query: 236 F 236
           F
Sbjct: 241 F 241