Pairwise Alignments

Query, 236 a.a., RNA-binding protein S4 from Pseudomonas simiae WCS417

Subject, 231 a.a., 16S rRNA pseudouridine(516) synthase from Vibrio cholerae E7946 ATCC 55056

 Score = 65.9 bits (159), Expect = 7e-16
 Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 25/240 (10%)

Query: 5   IRLSKRLIELVGCSRREAELFIEGGWVSVDGEVIDEPQFKVTTQKVALDPDAKATVPEPV 64
           +RL K L + +G +R+EA   ++ G V+VD  V     FK+           + T+  P 
Sbjct: 1   MRLDKFLCDALGTTRKEATQLLKSGEVTVDDVVQKSGAFKLKETSCVEWQGREITLHGPR 60

Query: 65  TILLHAPAGVDA-------ETAMASISAETLSEEHRFGKRPLKGHFLRLTASADLQAKAS 117
            I++H P GV         +TA+  +    + + H  G+               L    +
Sbjct: 61  YIMMHKPDGVVCSHEDGFNQTALTLLDEVNIQDLHFAGR---------------LDVDTT 105

Query: 118 GLLVFTQDWKILRKLTADAAKIEQEYVVEVEGDMVAHGLNRLNHGLTYKGKELPAVKASW 177
           GLL+ T D +   ++T+   K E+ Y V +   + A    + N G+  +G+    + A  
Sbjct: 106 GLLLITDDGQWSHRVTSPKHKCEKTYRVWLADPIQADYAEQFNRGIELRGERELTLPAQL 165

Query: 178 Q--NENRLRFAMKNPQPGVIALFCEAVGLKVIAIRRIRIGGVSIGK-VPVGQWRYLSGKE 234
           +  +E  +   +   +   +     A+G KVI + R RIG +++ + +  G++RYL+ +E
Sbjct: 166 EVISETEVLLTIHEGKYHQVKRMFAALGNKVIGLHRERIGQITLDETLEPGEYRYLTEEE 225