Pairwise Alignments

Query, 317 a.a., (4Fe-4S)-binding protein from Pseudomonas simiae WCS417

Subject, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 53.5 bits (127), Expect = 8e-12
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 76  IREAECIGCTKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIEM 128
           + E ECIGC KC++ACP   I    + +   + + C  C LCV  CPV+ I +
Sbjct: 194 VNEEECIGCEKCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISL 246



 Score = 49.3 bits (116), Expect = 2e-10
 Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 73  IAYIREAECIGCTKCIQACPVDAIVGAAKL---------MHTVIVDECTGCDLCVAPCPV 123
           IA I   +CI CT C Q CP +AI  A KL           TV  +EC GC+ CV  CP 
Sbjct: 152 IAVIDTDKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPG 211

Query: 124 DCIE 127
             IE
Sbjct: 212 SMIE 215



 Score = 40.4 bits (93), Expect = 7e-08
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 11/68 (16%)

Query: 78  EAECIGCTKCIQACPVDAIV---GAAKLMHTVIVDE--------CTGCDLCVAPCPVDCI 126
           +  C+ C KC++ CP + I     A K    +I+ +        C  C +CV  CPVD I
Sbjct: 88  KGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI 147

Query: 127 EMRPTTTV 134
            +     +
Sbjct: 148 SIEDIAVI 155



 Score = 28.9 bits (63), Expect = 2e-04
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 109 DECTGCDLCVAPCPVDCIEMRPTTTVL 135
           D C  C+ C   CP + IE+ P  T +
Sbjct: 9   DACLVCNACAKACPTEAIEIAPFKTCI 35



 Score = 28.5 bits (62), Expect = 3e-04
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 13/97 (13%)

Query: 40  CPPGGQETLAGLAQLLRVPVLELDTSRGEAPAQIAYIREAECIGCTKCIQACPVDAIVGA 99
           C P   +   G  +++    LEL + +    A       A CI C  C   CP  A+   
Sbjct: 271 CGPCAIKCPTGAIKVVNPKGLELPSKKKTEKAN----EFAMCIRCGACAMKCPTGAL-KM 325

Query: 100 AKLMH--------TVIVDECTGCDLCVAPCPVDCIEM 128
            K++H              C  C  CV  CP   +E+
Sbjct: 326 GKMVHEGKEYARVEFSPALCNECGECVDVCPQKTLEL 362



 Score = 27.7 bits (60), Expect = 5e-04
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 7/46 (15%)

Query: 81  CIGCTKCIQACPVDAIVGAAKLMHTVIVDECTGCDL---CVAPCPV 123
           CI C  C  ACP  A+V         +V   + CDL   C   CPV
Sbjct: 34  CIQCFSCATACPTGALVE----KDGKLVFNGSKCDLDGACQKACPV 75



 Score = 23.9 bits (50), Expect = 0.007
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 81  CIGCTKCIQAC 91
           C+ C KCI+AC
Sbjct: 374 CVMCLKCIEAC 384