Pairwise Alignments

Query, 317 a.a., (4Fe-4S)-binding protein from Pseudomonas simiae WCS417

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 47.4 bits (111), Expect = 6e-10
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 25/149 (16%)

Query: 59  VLELDTSRGEAPAQI--------AYIREAECIGCTKCIQACPVDAIVGAAKLMHTVIVDE 110
           VLE+ T R EA   +          I E  C+ C  C  ACPVDAI      ++ + V+ 
Sbjct: 98  VLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAISHNNTGLYEIDVNL 157

Query: 111 CTGCDLCVAPCPVDCIEMRPTTTVLIVGDLTITDQQRHERSLKRDRARRRYEQRNARLQR 170
           C  C  C+  CPV+         ++   +  ++++    +++K DR R            
Sbjct: 158 CVSCKNCLKACPVE-------NAIVTYSEPELSEKIEIAQNIKFDRER----------LG 200

Query: 171 EEAQKLAERVARAKRSVPVLPVQAATAQD 199
            E ++ ++ +A   R VP L +      D
Sbjct: 201 SEFKEKSDVIAEIPRIVPSLCIGCGNCVD 229



 Score = 44.7 bits (104), Expect = 4e-09
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 15/105 (14%)

Query: 31  IAQGEAINKCPPGGQETLAGLAQLLRVPVLELDTSRGEAPAQIAYIREAECIGCTKCIQA 90
           I  G+ +  CP             +R+ V E  T R    A+   + E +CIGC  C ++
Sbjct: 246 IKSGKCLEVCP----------TTAIRIGVPEKITKR---TAECYIVDEEKCIGCRICYRS 292

Query: 91  CPVDAIVGAAKLMHTVIVDE--CTGCDLCVAPCPVDCIEMRPTTT 133
           C V   +  +K  +   ++   C  C LC   CPVD I+   T T
Sbjct: 293 CNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAIDYLKTET 337



 Score = 38.9 bits (89), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 80  ECIGCTKCIQACPVDAI-----VGAAKLMHTVIVDECTGCDLCVAPCPVDCIEM 128
           +CI C+ C ++CP DAI         K M       C  C  CV  CP + +EM
Sbjct: 48  KCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEM 101



 Score = 31.6 bits (70), Expect = 3e-05
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 66  RGEAPAQIAYIREAECIGCTKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDC 125
           + +  A+I  I  + CIGC  C+  CP     G+  L   + V  C     C+  CP   
Sbjct: 206 KSDVIAEIPRIVPSLCIGCGNCVDVCP-----GSIDL-ERLKVTSCIKSGKCLEVCPTTA 259

Query: 126 IEM 128
           I +
Sbjct: 260 IRI 262



 Score = 25.0 bits (53), Expect = 0.003
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 109 DECTGCDLCVAPCPVDCIEM 128
           ++C  C  C   CP D I M
Sbjct: 47  EKCISCSACKESCPSDAISM 66