Pairwise Alignments

Query, 302 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 294 a.a., flagellar protein MotY from Vibrio cholerae E7946 ATCC 55056

 Score =  109 bits (272), Expect = 9e-29
 Identities = 72/274 (26%), Positives = 141/274 (51%), Gaps = 13/274 (4%)

Query: 17  AMALTFQTRLENIEWKVEGDQ-FECRLTQPITDFGSGEFVRRAGEQAT--FRLKAYNGSL 73
           A+ + +    +   W++  +   ECRL  PI ++G  EF  RAG++    F LK      
Sbjct: 22  ALEVRYMATPQQSTWQMATNTPLECRLVHPIPNYGDAEFSSRAGKKINLDFELKMRRPMG 81

Query: 74  GAGSATLLAAAAPWQPGRGD---INLGAVRAGSGDVLFNSSQAQAGRLFNGLLEGRSPTV 130
              + +L++    W+PG G     NL   +   G +        A  L + L +GR PT 
Sbjct: 82  DTRNVSLVSMPPVWRPGEGADRITNLQFFKQFDGYI----GGQTAWSLLSELEKGRYPTF 137

Query: 131 RHYGREGGYS--EIRLLPVKFNKAYNDYQLCTAKLLPMNYDQVKQTEVGFPGG-GIELDA 187
            +   +      E+ L  V F + YN++  C +KLLP +++ +  T + +  G  +EL+ 
Sbjct: 138 SYQDWQSRDQRIEVALSSVLFQQPYNEFSDCISKLLPYSFEDISFTILHYDQGTSVELNK 197

Query: 188 AAKKKLDVILAFMKADPTVNHIELNGHSDNSGNRLTNRDVSRRRGLAVMDYFKANGIPES 247
           A++K+L  I  +++ +  ++ + ++ ++D++     ++++S +R   + +YFK+ G+PE 
Sbjct: 198 ASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQNLSEQRAEVLREYFKSIGLPED 257

Query: 248 QITLRFHGESYPLAPNTNAANRARNRRVNIQLER 281
           +I ++ +G+  P+A N +   + +NRRV I L R
Sbjct: 258 RIQVQGYGKRRPIADNASPIGKDKNRRVVISLGR 291