Pairwise Alignments

Query, 302 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 286 a.a., OmpA/MotB domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  112 bits (281), Expect = 8e-30
 Identities = 83/282 (29%), Positives = 132/282 (46%), Gaps = 14/282 (4%)

Query: 9   LSVFASLPAMALTFQTRLENIEWKVEGDQ-FECRLTQPITDFGSGEFVRRAGEQ--ATFR 65
           LS+  +  A    +   LE   W++ G+    CRL   I  +G   F  RAG+     F 
Sbjct: 7   LSLATTAQAELRHYVASLEQSSWRLSGNTPIICRLEHEIPSYGKAVFTSRAGKDHDLNFS 66

Query: 66  LKAYNGSLGAGSATLLAAAAPWQPG---RGDINLGAVRAGSGDVLFNSSQAQAGRLFNGL 122
           L  +       SA L++ A  W+PG   R   +L   +  SG+V     +  A  + N L
Sbjct: 67  LDMWVKPDEVTSAKLMSMAPAWRPGVVSRPITDLTYQKYFSGEV----PKKAAWSMLNEL 122

Query: 123 LEGRSPTVRH---YGREGGYSEIRLLPVKFNKAYNDYQLCTAKLLPMNYDQVKQTEVGFP 179
             G  PT  +   Y R    + + L    F + Y +++ C A LLP ++D +  T + + 
Sbjct: 123 ERGMQPTFYYADWYNRSSKVA-VGLSAANFGRRYAEFKSCLANLLPYSFDDIAFTVLTYE 181

Query: 180 GGGIELDAAAKKKLDVILAFMKADPTVNHIELNGHSDNSGNRLTNRDVSRRRGLAVMDYF 239
            GG EL   +K ++  +  ++  DP V  + ++ ++D+ G R  N+ VS +R  +V   F
Sbjct: 182 FGGSELTRYSKAQIAKVQEYLSYDPEVELVLIDAYTDSFGGRSVNKKVSEKRANSVKQLF 241

Query: 240 KANGIPESQITLRFHGESYPLAPNTNAANRARNRRVNIQLER 281
            + GIP  +I    HGE   +A N     RARNRRV I+L +
Sbjct: 242 LSAGIPNERIHTYGHGERRHVASNDTIDERARNRRVVIRLSK 283