Pairwise Alignments

Query, 605 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 708 a.a., sensor histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score = 68.9 bits (167), Expect = 7e-16
 Identities = 78/353 (22%), Positives = 154/353 (43%), Gaps = 27/353 (7%)

Query: 264 HQYHRYLLIFSTLLVGLLLYLAVRLLR-SFAEINRVNRALHAANETLEQRVERRTRQLKD 322
           H Y   ++   T+L+ +LL   + + R +++ +  + R  H        R  R      +
Sbjct: 335 HNYLLNIIELGTILMLVLLVSGMLVYRGAYSLLQPIERIHHVVKAVQSGRNVRIGELGLE 394

Query: 323 AQSELLDSARQAG-MAEIATNVLHNVGNVLNSVNISAELVTRKLRSSKALGLGKAMQLIN 381
             +EL + A Q   M ++       + +    + +  E  TR L+  K   L + + L+N
Sbjct: 395 KDNELANLAEQFDRMLDLLQRRNAQIQSAAEQLELKVEERTRSLQE-KTEELQRNVSLLN 453

Query: 382 EHKADLGTFLTEDEKGKLLPGYLNQLVDAIAVEQQGMT-------DELAQLSKSVD---- 430
           E +A L T       G+L  G  +++ +  AV    M        D+  Q+ + +D    
Sbjct: 454 ETRAQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRSELGDKAGQVEEEIDLVIQ 513

Query: 431 ---HIKDIVSTQQSYAGAATLLEPVH---ISGLMEDALRMNAGALSRHHVTVVKEYAQVP 484
               I  I+ +   Y+       P+    I+ ++E+ L +   ++ +  V + +E     
Sbjct: 514 QVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEEMLVLVRHSIKKQEVVLHQELNASC 573

Query: 485 EILADKHRLLLIMVNLISNAKYAMSNLSD---RPRQMTLKVQPLEDNTLQISVKDDGEGI 541
            +  ++ +LL +++NL+ NA +AM        R     ++ +P+    ++I ++D+G GI
Sbjct: 574 PVQINRPQLLQVLINLVVNAAHAMDGKGRIWIRTYDWVVQDEPVG---VKIEIEDEGCGI 630

Query: 542 PAENMTRIFTHGFTTRKEGHGFGLHSCALAAVEMNGQLSAHSDGPGLGAVFTL 594
             E + RIF   +TTR +G G GL S +   ++  G     +   G G +FT+
Sbjct: 631 APEQLGRIFDPFYTTRPDGTGLGL-SLSYGIIKRIGGTIEVTSTLGKGTLFTI 682



 Score = 25.4 bits (54), Expect = 0.009
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 268 RYLLIFSTLLVGLLLYLAVRLLRSFAEIN--------RVNRALHAANETLEQRVERRTRQ 319
           RY ++  TLL  LL  +++  +  +  I+        +V   L  AN TLEQ   R+ ++
Sbjct: 20  RYRILILTLLPILLTLVSLVFITIYWNISYTGQQLFMKVKADLTVANNTLEQVQRRQEKE 79

Query: 320 LKD 322
           L++
Sbjct: 80  LEN 82