Pairwise Alignments

Query, 605 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 508 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score = 67.8 bits (164), Expect = 1e-15
 Identities = 58/284 (20%), Positives = 125/284 (44%), Gaps = 43/284 (15%)

Query: 319 QLKDAQSELLDSARQAGMAEIATNVLHNVGNVLNSVNISAELVTRKLRSSKALGLGKAMQ 378
           +L + Q+EL+  +R   M E+A+ + H +   L++++         ++ S+         
Sbjct: 263 RLHELQAELVHVSRLTAMGEMASALAHELNQPLSAIS-------NYMKGSR--------- 306

Query: 379 LINEHKADLGTFLTEDEKGKLLPGYLNQLVDAIAVEQQGMTDELAQLSKSVDHIKDIVST 438
                              +LL G  +     I    +   ++  +  + +  ++D V+ 
Sbjct: 307 -------------------RLLAGSTDPNTVKIESAMERAAEQALRAGQIIRRLRDFVAR 347

Query: 439 QQSYAGAATLLEPVHISGLMEDALRMNAGALSRHHVTVVKEYAQVPEILADKHRLLLIMV 498
            +S     +L + +  +G +        G + R ++    +      +L D+ ++  ++V
Sbjct: 348 GESEKRVESLAKLIEEAGALGLTGAREQGVVLRFNLDPAHDL-----VLVDRVQIQQVLV 402

Query: 499 NLISNAKYAMSNLSDRPRQMTLKVQPLEDNTLQISVKDDGEGIPAENMTRIFTHGFTTRK 558
           NL  NA  AM+N SD+ ++++     + D+ ++++V D G G+P +   ++F   FTT++
Sbjct: 403 NLFRNALEAMAN-SDK-KELSAGNARVADDMVEVTVSDTGSGLPEQVKAKLFQTFFTTKE 460

Query: 559 EGHGFGLHSCALAAVEMNGQLSAHSDGPGLGAVFTLTIPMTPAG 602
            G G GL           G++ A ++  G GA F  T+P+ P G
Sbjct: 461 TGMGVGLSISRSIIEAHGGRMWAETNSAG-GATFRFTLPLAPVG 503