Pairwise Alignments

Query, 672 a.a., TonB-dependent receptor from Pseudomonas simiae WCS417

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 74.3 bits (181), Expect = 2e-17
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 23/156 (14%)

Query: 8   RLTPLAAALLIC-------SETHALELQPQVITGNPLGS--EQLASPTTVLEGDDLTLQQ 58
           +L+P++AA+L         +ET     +  V+T N +     ++A    VLEG+ L  Q 
Sbjct: 2   KLSPVSAAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQG 61

Query: 59  KGSLGETLNKQPGVSSSYFGPGASRP---IIRGQDGDRIRILRNGV------GALDASSL 109
           K  L + LN++PGVS +    GA RP    IRG  G+RI I+R+G+      GA D +  
Sbjct: 62  KTELYDALNQEPGVSVT---GGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADINDK 118

Query: 110 SYDHAVPLDPVNVDRIEIVRGPAALLYGGSAIGGVV 145
              +   L   NV +I++V+G ++ LYG  AIGGVV
Sbjct: 119 YGRNTFSLS--NVKQIQVVKGASSTLYGSGAIGGVV 152



 Score = 42.4 bits (98), Expect = 8e-08
 Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 37/242 (15%)

Query: 415 SLSSGAVYTLTPVWSLAATLGYTERAPTFYELYANGAH--VATGTYELGDAN-LKKEKAV 471
           S S+   Y   P W+   +  +  RAP++ + Y    H  V    + +   N L+ E + 
Sbjct: 452 SPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSD 511

Query: 472 SSDLALRFDNGTHKGSFGIFYSRFSNYIGLLGSGRTLNDEGEEDAGG--IPEY-TYSGVR 528
           S +L  ++DNG  +    +FYS F N+I        +   G ++A G  I +Y   +GV+
Sbjct: 512 SFELGSKYDNGQTQFYVAVFYSIFDNFI-------DVKQVGYDNATGSVIQQYQNIAGVK 564

Query: 529 ARFAGFEA----QDHWKLGESAYGKFALELSGDYTRATNLDTGEALPRIAPLRLNSGLLW 584
              A         D W +          +    Y R            + PL  +  L +
Sbjct: 565 TYGAEMSVMHRLDDRWSVENKLGYVDGKDGENQYVRT-----------LTPLEGSVQLNY 613

Query: 585 ELDRWQARIDVEHAAGQGRVP--DNESG-------TDGYTTLGASAGYRFNVGGSQWLAF 635
           + +RW A   +  A+   RVP    E G       T G+ +      Y++N   S     
Sbjct: 614 QRERWDAYSRLNWASAMSRVPTCTTEQGKETECATTTGWVSWDIGLNYQWNAQLSASFNV 673

Query: 636 VN 637
           VN
Sbjct: 674 VN 675