Pairwise Alignments

Query, 372 a.a., permease from Pseudomonas simiae WCS417

Subject, 366 a.a., LPS export ABC transporter permease LptF from Vibrio cholerae E7946 ATCC 55056

 Score =  219 bits (558), Expect = 9e-62
 Identities = 129/373 (34%), Positives = 213/373 (57%), Gaps = 10/373 (2%)

Query: 1   MIVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFL 60
           MI+ RYL RE + +  A+  VL ++ +S +F++ LA A+ G +    +  I+G  +P   
Sbjct: 1   MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMG 60

Query: 61  QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALIVAWLSLGL 120
            L+LPL L++GILL +GRLY ESE+TV++ATG+  + L+   +  A   A + A+ +L L
Sbjct: 61  LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL 120

Query: 121 APQGAMQFQLVLNKQDAMTEFDTLEPGRFQALNDGSRVTYTETMTDDRANLGGVFISEKR 180
           AP    +   ++ +  A    D L+ G FQ   DGS V + + +  +   L  VF+++  
Sbjct: 121 APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNI--ENRKLYNVFVAQLA 178

Query: 181 LGQDKKDRGI-SVLVADSGRQEVRPDGSRYLILENGYRYDGSPGMADYRAIKYDTYGVML 239
                +D  + SV+ + SG  +   DG + + L +G RY+G P   DY    +D+Y  ++
Sbjct: 179 ----PRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLI 234

Query: 240 ARPDISDEVTDRDAIPTTELFGSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQG 299
            + ++     D +A+PT  L  + + R+ AELQWRISL + + ++T++ VPLS VNPRQG
Sbjct: 235 GQREVKSAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQG 294

Query: 300 RFLKLLPAILLYMAYLTILISARGSLEKGKLSPTLGLWWVHGIFLVIGL--GLLYWEPIR 357
           RF K+ PAIL+Y+ Y   L + + ++E G L   +GLW ++   L+  L    L   P+R
Sbjct: 295 RFAKMGPAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAALMVNTLDSIPVR 354

Query: 358 LKMKSRRGQKELA 370
            + K R  Q+++A
Sbjct: 355 -RFKDRWKQRKVA 366