Pairwise Alignments

Query, 372 a.a., permease from Pseudomonas simiae WCS417

Subject, 370 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  238 bits (608), Expect = 2e-67
 Identities = 141/372 (37%), Positives = 216/372 (58%), Gaps = 5/372 (1%)

Query: 1   MIVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFL 60
           MIVFRYL REVL    AV  VLL I +S  FV+ LA A+ G      +  ++G  LP  +
Sbjct: 1   MIVFRYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLV 60

Query: 61  QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALIVAWLSLGL 120
            L+LPL LFLGIL+A+GR+Y E+EM +L   G+S+  +  +T+I A    L   +LSL +
Sbjct: 61  VLVLPLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV 120

Query: 121 APQGAMQFQLVLNKQDAMTEFDTLEPGRFQALNDGSRVTYTETMTDDRANLGGVFISEKR 180
           AP    Q   VL K  +      L  GRFQA  +G  V + E +  D   L  VF+++  
Sbjct: 121 APWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDN-ELEKVFVAQ-- 177

Query: 181 LGQDKKDRGIS-VLVADSGRQEVRPDGSRYLILENGYRYDGSPGMADYRAIKYDTYGVML 239
           L     + G++ V+VA  GR     +GS+ L L +G RY GSP   DY+ I++  Y + +
Sbjct: 178 LPDPNDEIGLTNVVVAKGGRVIEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQI 237

Query: 240 ARPDISDEVTDRDAIPTTELFGSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQG 299
               + +      A+P  EL       ++AE  WR+++PL + I+TL+AVPL+RVN RQG
Sbjct: 238 KEQQVDERRRKLSALPLGELLKIDGPEAVAEFHWRLAIPLAIPIMTLIAVPLARVNVRQG 297

Query: 300 RFLKLLPAILLYMAYLTILISARGSLEKGKLSPTLGLWWVHGIFLVIGLGLLYWE-PIRL 358
           +F K+LPA+LLY+ Y  ++++ R +L+ G +   LG+WW+H   L++G+ LL  + P+  
Sbjct: 298 KFAKMLPAVLLYLGYFGLMVAGRKALQDGVIPLYLGMWWIHLSALIMGILLLGKDRPLFT 357

Query: 359 KMKSRRGQKELA 370
           ++ +   +K++A
Sbjct: 358 RLSAAMARKKVA 369