Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 165 a.a., RNA polymerase sigma factor from Pseudomonas sp. BP01

 Score = 81.3 bits (199), Expect = 9e-21
 Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 27  VFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRP-LVQVEELSTYLLRCAGNIAID 85
           ++L+ R +++  + RR+ C+ TAADL QD F+R   +    ++E    YL   A N+ ID
Sbjct: 9   LYLAHREEIQEYLDRRLRCKETAADLTQDTFIRLSEQMGRSRIENFRAYLFSSARNLFID 68

Query: 86  HLRSEGARARSSEGWLPEQQDNQGSEPQAALE----AGNDLRHVEAALRSLPERTRQIFL 141
           H R +  + R SE  L   + +  ++P A LE    A   L  +   ++++PE  R++FL
Sbjct: 69  HTRRQ--QHRKSEP-LDSPEASAVAQPTATLEQAAIANQQLAALNTVIQNMPEPCREVFL 125

Query: 142 LNRIHGRKYAQIAKAMGLSQSAVEKHMMRALEACKASLRE 181
           + R+ G  Y +I + + +S       M++ALE  K  + +
Sbjct: 126 MVRVEGMTYVEIGERLSISPKTAYSRMVKALELLKQGMSQ 165