Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 374 a.a., sigma-70 family RNA polymerase sigma factor from Pseudomonas sp. BP01

 Score = 78.6 bits (192), Expect = 1e-19
 Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 3/160 (1%)

Query: 25  LQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWR--RPLVQVEELSTYLLRCAGNI 82
           L  F      +   ++RR+  R  AAD+ Q+ +L+  +     V V    +++ R AGN+
Sbjct: 10  LATFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVKVDAQAVPVLHARSFIFRVAGNL 69

Query: 83  AIDHLRSEGARARSSEGW-LPEQQDNQGSEPQAALEAGNDLRHVEAALRSLPERTRQIFL 141
           AID LR E   A S +      +       P+A L A   L+ ++ AL  LP+  RQ  L
Sbjct: 70  AIDALRREQRLAASHDDCDAAGELACPAPAPEAMLLARERLQILDDALLKLPDNARQALL 129

Query: 142 LNRIHGRKYAQIAKAMGLSQSAVEKHMMRALEACKASLRE 181
           LNR+ G   AQIA+ +G+S+S V K++ +AL  C+  L++
Sbjct: 130 LNRVEGLTQAQIAQRLGVSESMVAKYIGQALRHCRDWLKQ 169