Pairwise Alignments

Query, 505 a.a., chromosomal replication initiation protein from Pseudomonas simiae WCS417

Subject, 470 a.a., chromosomal replication initiator protein dnaA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  273 bits (697), Expect = 1e-77
 Identities = 156/501 (31%), Positives = 269/501 (53%), Gaps = 49/501 (9%)

Query: 3   VELWQQCVELLREELPAQQFNTWIRPL-QVEAEGDELRVYAPNRFVLDWVNEKYLSRVLE 61
           V LW +C+E++++ +P   +NTW  P+  ++ E   L V  P++F  + + EK++  + +
Sbjct: 7   VVLWNRCLEVIKDNVPETTYNTWFAPIVPLKYEDKTLIVQIPSQFFYEILEEKFVDLLRK 66

Query: 62  LLDEH-GNGLAPVLSLLIGSKRSSAPRAAPNAPLAAAASQAQAAAAP-AVSAPSPAPAPS 119
            L +  G G   + ++++         + PN  +   AS    A  P ++   + AP+  
Sbjct: 67  TLYKAIGEGTKLMYNVMVDKT------SIPNQTVNLEASNRSTAVTPKSIVGGNKAPSFL 120

Query: 120 KSSAQKNAPENEEPSRDSFDPMAGAASQQAPVRAEQRTVQVEGALKHTSYLNRTFTFENF 179
           K+           P+    DP                            +LN  + FENF
Sbjct: 121 KA-----------PAVQDLDP----------------------------HLNPNYNFENF 141

Query: 180 VEGKSNQLARAAAWQVADNPKH-GYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVY 238
           +EG SN+L+R+ A  VA NP    +NPLFLYG  G+GKTHL +A+G  + +   + +V+Y
Sbjct: 142 IEGYSNKLSRSVAEAVAQNPAGTAFNPLFLYGASGVGKTHLANAIGTKIKELYADKRVLY 201

Query: 239 LHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEG 298
           + +  F      +++ N  N+F  FY+++D L+IDDIQ FA   ++Q  FFH FN L + 
Sbjct: 202 VSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQN 261

Query: 299 GQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHD 358
           G+Q+ILTSDR P  ++G+EERL +RF WG+   +E P +E R  IL  K  +  +  P +
Sbjct: 262 GKQLILTSDRAPVLLQGMEERLLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFPPE 321

Query: 359 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQDKLVSVDNIQ 418
              +IA+ +  +VR+LEG +  ++A S    ++I ++L +  +  ++  + K V++D+I 
Sbjct: 322 VIDYIAENVNESVRDLEGIVIAIMARSTIFNKEIDLDLAQHIVHGVVHNETKAVTIDDIL 381

Query: 419 RTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHA 478
           + V +++ ++ S + +K R R V + RQ+AM L+K  T+ S  +IG   G +DH TVLHA
Sbjct: 382 KVVCKHFDLEASAIHTKSRKREVVQARQIAMYLAKNYTDFSTSKIGKFIGNKDHATVLHA 441

Query: 479 CRKINELKESDADIREDYKNL 499
           C+ +    E D   + + + +
Sbjct: 442 CKTVKGQLEVDKSFQAEVQEI 462