Pairwise Alignments

Query, 380 a.a., Outer membrane beta-barrel assembly protein BamB from Variovorax sp. SCN45

Subject, 386 a.a., outer membrane protein assembly factor BamB from Vibrio cholerae E7946 ATCC 55056

 Score =  119 bits (299), Expect = 1e-31
 Identities = 85/316 (26%), Positives = 137/316 (43%), Gaps = 15/316 (4%)

Query: 70  DIVTVAGSDGTVVAIDARAGRETW----------RASAGTPLAAGVGSDGSLAAVVTTGN 119
           D V VA  DG V A+D + G+  W          R S G   A G    GS   VV   N
Sbjct: 68  DKVFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFIGSENGVV---N 124

Query: 120 ELVALENGKVLWKQKLSAQAFTAPLVAGRRVFVQTADRSVSAWDGQSGRRLWIQQRAGEN 179
            L A E G+ LW   +  +   AP      V V T+  ++ A + + G + W       N
Sbjct: 125 ALDA-ETGEPLWASAIEGEVLAAPAADNNIVIVNTSRGALIALNQEDGAQKWTISTEVPN 183

Query: 180 LVLRKSGVLIAVGDTLVAGL-GGRLVGINPGNGTSRWEAPIAAPRGTNDVERLVDLTGSV 238
           L LR      AV   +  G   GRL       G   W+ P+  P+G  +++RLVD+  S 
Sbjct: 184 LTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKGATEIDRLVDVDASP 243

Query: 239 SRVGDSVCARAYYASVGCVDTARGTLAWSKPASGADGVSGDDRFVYGTESDGSVIAWRRG 298
             +G ++    +   +  +D   G   W +  S A  ++ D   +Y       ++A    
Sbjct: 244 LVIGGTLFTVGFNGQLIAIDLRSGQPIWKRNYSSATDMATDGSRLYLVTDKDHLVAVDTR 303

Query: 299 DGERAWQMSRLKNRELTSPLAVGRSLIIGESTGTLHFVSREDGALLNRVTPDGSAITVAP 358
            G   W  ++L++R LT+P  +   L++G++ G LH++ R  G  + +   + S   V P
Sbjct: 304 SGTELWSNTQLEHRLLTAPKMIDDYLVVGDAEGYLHWIDRNSGEFIAQQLVNDSGFAVGP 363

Query: 359 VLVGNTVVVVTAKGGV 374
           + + +  V+VT  G +
Sbjct: 364 LALNDGYVIVTRNGQI 379



 Score = 43.9 bits (102), Expect = 8e-09
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 16/115 (13%)

Query: 67  INGDIVTVAGSDGTVVAIDARAGRETWRASAGTPLAAGVGSDGSLAAVVTTGNELVALE- 125
           I G + TV G +G ++AID R+G+  W+ +  +  A  + +DGS   +VT  + LVA++ 
Sbjct: 246 IGGTLFTV-GFNGQLIAIDLRSGQPIWKRNYSS--ATDMATDGSRLYLVTDKDHLVAVDT 302

Query: 126 -NGKVLWKQ-KLSAQAFTAPLVAGRRVFVQTADRSVSAWDGQSGRRLWIQQRAGE 178
            +G  LW   +L  +  TAP +    + V  A+          G   WI + +GE
Sbjct: 303 RSGTELWSNTQLEHRLLTAPKMIDDYLVVGDAE----------GYLHWIDRNSGE 347