Pairwise Alignments

Query, 424 a.a., (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3) from Variovorax sp. SCN45

Subject, 613 a.a., GcpE, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  119 bits (299), Expect = 2e-31
 Identities = 94/307 (30%), Positives = 143/307 (46%), Gaps = 50/307 (16%)

Query: 30  VTVGGDAPVRVQSMTNTDTVDAIGTAIQVKELALAGSEMVRITVNTPEAAAQVPYIREQL 89
           V +GG  P+R+QSMTNT T+D      Q K +  AG E VR+T    + A  +  I   L
Sbjct: 19  VPLGGPNPIRIQSMTNTSTMDTEACVEQAKRIVDAGGEYVRLTTQGVKEAENLMNINIGL 78

Query: 90  DRMGVDVPLIGDFHYNGHRLLTDYPACAEALSKYRINPGN-------VGKGDKKDKQFGQ 142
              G  VPL+ D H+N    + D    A+   K RINPGN         K +  D+++ Q
Sbjct: 79  RSQGYMVPLVADVHFNPK--VAD--VAAQYAEKVRINPGNYVDAARTFKKLEYTDEEYAQ 134

Query: 143 -----------MIDAAMRWNKPVRIGVNWGSLDQELLASLMDTNSQRAQPWDAKQVMYEA 191
                       ++     +  +RIGVN GSL   +++   DT               E 
Sbjct: 135 EIQKIHDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGDTP--------------EG 180

Query: 192 LITSAIESAKLAESMGMAGNQVILSCKVSGVQDLISVYRELARRCE-----YPLHLGLTE 246
           ++ S +E  ++  +       V++S K S    ++   R L    E     +PLHLG+TE
Sbjct: 181 MVESCMEFLRICVAEHF--TDVVISIKASNTVVMVKTVRLLVAVMEQEGMSFPLHLGVTE 238

Query: 247 AGMGTKGTVASATALSILLQEGIGDTIRVSLTPQPGESRTQEVLIANEILQALGLR---V 303
           AG G  G + SA  +  LL +G+GDTIRVSL+  P      E+ +A +++  + LR    
Sbjct: 239 AGDGEDGRIKSALGIGALLCDGLGDTIRVSLSEAP----EAEIPVARKLVDYVLLRQDHP 294

Query: 304 FVPSVTA 310
           ++P + A
Sbjct: 295 YIPGMEA 301



 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 14/125 (11%)

Query: 255 VASATALSILLQEGIGDTIRVSLTPQPGESRTQEVLIANEILQALGLRVFVPSVTACPGC 314
           + SA  +  L+ +G+ D I   L  Q   S       A  ILQA   R       +CPGC
Sbjct: 467 IKSAVDMGALIFDGLCDGI--FLFNQGSLSHAVVDATAFGILQAGRTRTSKTEYISCPGC 524

Query: 315 GRTTSTTFQELAKQIDDYLRMQMPVWRKKYPGVETLKVAVMGCIVNGPGESKHADIGISL 374
           GRT     + +A+             +     ++ LK+ +MGCIVNGPGE   AD G   
Sbjct: 525 GRTLYDLEKTIARI------------KAATSHLKGLKIGIMGCIVNGPGEMADADYGYVG 572

Query: 375 PGTGE 379
            G G+
Sbjct: 573 AGRGK 577